RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 BBS7Q8IWZ6 715 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LAS2Q8IYD9 372 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RNF175Q8N4F7 328 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 OR8H1Q8NGG4 311 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SPPL2AQ8TCT8 520 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 GTPBP3Q969Y2 492 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 ZC3HAV1LQ96H79 300 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 APOLD1Q96LR9 279 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MGME1Q9BQP7 344 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 DOHHQ9BU89 302 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ZSCAN5AQ9BUG6 496 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SPATA9Q9BWV2 254 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TRIM45Q9H8W5 580 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 EVA1BQ9NVM1 165 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SH3BP4Q9P0V3 963 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PCDH10Q9P2E7 1040 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RABL2AQ9UBK7 228 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 SEC14L4Q9UDX3 406 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RAI2Q9Y5P3 530 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SMIM35A0A1B0GVV1 85 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MBLAC1A4D2B0 266 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 PCDH17O14917 1159 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MYL12BO14950 172 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LRRTM2O43300 516 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TNFRSF21O75509 655 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 TBX18O95935 607 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 LGI1O95970 557 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 HLA-DQB1P01920 261 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PRPS2P11908 318 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ANXA8P13928 327 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ARSBP15848 533 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SMPD1P17405 629 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MYL12AP19105 171 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 HOXD9P28356 352 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 CNR2P34972 360 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PTGER3P43115 390 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 CLDN20P56880 219 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SPIBQ01892 262 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 P2RY14Q15391 338 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SPHARQ15513 63 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ZXDCQ2QGD7 858 aaPredicted RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 HKDC1Q2TB90 917 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 CYP27C1Q4G0S4 372 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 FLYWCH1Q4VC44 716 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MPPE1Q53F39 396 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 DALRD3Q5D0E6 543 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 LIPKQ5VXJ0 399 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 GDPGP1Q6ZNW5 385 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 DUSP18Q8NEJ0 188 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 KLHDC9Q8NEP7 349 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 HASPINQ8TF76 798 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 UBTD2Q8WUN7 234 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 PMEPA1Q969W9 287 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SLC6A18Q96N87 628 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 QRFPRQ96P65 431 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 GFM1Q96RP9 751 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 IL4I1Q96RQ9 567 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ZIC5Q96T25 663 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 ACBD6Q9BR61 282 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 BOCQ9BWV1 1114 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 EBPLQ9BY08 206 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RACGAP1Q9H0H5 632 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 SLC25A19Q9HC21 320 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 RBFOX1Q9NWB1 397 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 TXNL4BQ9NX01 149 aaKnown RBP6.53□□□□□ -1.36
VPS39-202ENST00000348544 ING3Q9NXR8 418 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 MAPRE3Q9UPY8 281 aa6.53□□□□□ -1.36
VPS39-202ENST00000348544 GREB1Q4ZG55 1949 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 A0A0G2JLL6 359 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 LOC102723532A0A0G2JNH3 316 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SH3D21A4FU49 640 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 RRN3P2A6NIE6 340 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ZAR1LA6NP61 321 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 I3L521 148 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ADAMDEC1O15204 470 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PCDH7O60245 1069 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TSPAN9O75954 239 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TPPPO94811 219 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 AP2A2O94973 939 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CHRM5P08912 532 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 ZNF865P0CJ78 1059 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 PIPP12273 146 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 ICAM2P13598 275 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TNNI3P19429 210 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PSMA1P25786 263 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 OR1E1P30953 314 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 AGFG1P52594 562 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 ABATP80404 500 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 FOXD4Q12950 439 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 MAB21L1Q13394 359 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CDH18Q13634 790 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ZNF628Q5EBL2 1059 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 KLHL17Q6TDP4 642 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TEX261Q6UWH6 196 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CD300LGQ6UXG3 332 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 MSANTD1Q6ZTZ1 278 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PTCHD4Q6ZW05 846 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PRRT2Q7Z6L0 340 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 DDX53Q86TM3 631 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 APOBEC3FQ8IUX4 373 aaKnown RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms