RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RUVBL1Q9Y265 456 aaKnown RBP12.31□□□□□ -0.44
CLK3-201ENST00000345005 HEMK1Q9Y5R4 338 aaPredicted RBP12.31□□□□□ -0.44
CLK3-201ENST00000345005 SNX5Q9Y5X3 404 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 MUC3AQ02505 3323 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 LRP4O75096 1905 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 MYO1DO94832 1006 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PCNAP12004 261 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CCR5P51681 352 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 DDX39BQ13838 428 aaKnown RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 KRT33BQ14525 404 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 TRIM16LQ309B1 348 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PAGE3Q5JUK9 113 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CATSPEREQ5SY80 951 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 NANOGP8Q6NSW7 305 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 LAS2Q8IYD9 372 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PIK3C3Q8NEB9 887 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 SH3KBP1Q96B97 665 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 VMP1Q96GC9 406 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 APIPQ96GX9 242 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CCDC115Q96NT0 180 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CAMK1GQ96NX5 476 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 IL17FQ96PD4 163 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 SH3GL1Q99961 368 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 RAB11FIP5Q9BXF6 653 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CLMPQ9H6B4 373 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 FANCEQ9HB96 536 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 USE1Q9NZ43 259 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CA14Q9ULX7 337 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 DLGAP4Q9Y2H0 992 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 TSC22D4Q9Y3Q8 395 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 FAM32AQ9Y421 112 aaKnown RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 PLEKHM1Q9Y4G2 1056 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 HEBP2Q9Y5Z4 205 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PDZK1P1A8MUH7 402 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 C10orf142B7Z368 130 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 FOXE1O00358 373 aaPredicted RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 KDM1AO60341 852 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 MRPS14O60783 128 aaKnown RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 SNAP29O95721 258 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 ANXA6P08133 673 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CRHBPP24387 322 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 ACSM2AQ08AH3 577 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CAPRIN1Q14444 709 aaKnown RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 SLBPQ14493 270 aaKnown RBP eCLIP12.3□□□□□ -0.44
CLK3-201ENST00000345005 ACSM2BQ68CK6 577 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 GLYATQ6IB77 296 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 NOXRED1Q6NXP6 359 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 C17orf64Q86WR6 236 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 ZNF687Q8N1G0 1237 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 CLEC4FQ8N1N0 589 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 KRT78Q8N1N4 520 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 OR8J3Q8NGG0 315 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 HUS1BQ8NHY5 278 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 DNAJB14Q8TBM8 379 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 APOLD1Q96LR9 279 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 RNF145Q96MT1 663 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 RBM4BQ9BQ04 359 aaKnown RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 RBM4Q9BWF3 364 aaKnown RBP12.3□□□□□ -0.44
CLK3-201ENST00000345005 GORASP2Q9H8Y8 452 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 NANOGQ9H9S0 305 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PELI2Q9HAT8 420 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 ANKHQ9HCJ1 492 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PRM3Q9NNZ6 103 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 DNAJB9Q9UBS3 223 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 SH2B3Q9UQQ2 575 aa12.3□□□□□ -0.44
CLK3-201ENST00000345005 PIPSLA2A3N6 862 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 MAGEB17A8MXT2 336 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 PRAMEF26H0Y7S4 382 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 ALPLP05186 524 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 ITIH1P19827 911 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 NUDT1P36639 197 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 DGKQP52824 942 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 TPD52P55327 224 aaPredicted RBP12.29□□□□□ -0.44
CLK3-201ENST00000345005 CLCA4Q14CN2 919 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 SPIN4Q56A73 249 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 TMEM31Q5JXX7 168 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 KIAA0895LQ68EN5 471 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 GTF2IRD2BQ6EKJ0 949 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 TMEM53Q6P2H8 277 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 GTF2IRD2Q86UP8 949 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 ANKRD13BQ86YJ7 626 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 RNF175Q8N4F7 328 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 LMNTD1Q8N9Z9 388 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 DNAJB8Q8NHS0 232 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 SLC13A3Q8WWT9 602 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 OR1E3Q8WZA6 343 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 SNX19Q92543 992 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 SHDQ96IW2 340 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 MUS81Q96NY9 551 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 MENTQ9BUN1 341 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 MROQ9BYG7 248 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 IMP3Q9NV31 184 aaKnown RBP12.29□□□□□ -0.44
CLK3-201ENST00000345005 ADGRE2Q9UHX3 823 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 MAPRE3Q9UPY8 281 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 CA5BQ9Y2D0 317 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 COLEC10Q9Y6Z7 277 aa12.29□□□□□ -0.44
CLK3-201ENST00000345005 H0Y8X5 98 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 SLC22A1O15245 554 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 PRMT3O60678 531 aa12.28□□□□□ -0.44
CLK3-201ENST00000345005 KCNH1O95259 989 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms