RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF556Q9HAH1 456 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 C11orf16Q9NQ32 467 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 PRSS21Q9Y6M0 314 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 ENTPD6O75354 484 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 CSO75390 466 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 POMCP01189 267 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF30P17039 623 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 CSTF2P33240 577 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 KIR3DL1P43629 444 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 TTPAP49638 278 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 ATN1P54259 1190 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 HSPA14Q0VDF9 509 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 DGKKQ5KSL6 1271 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 MFSD14CQ5VZR4 134 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 PLAG1Q6DJT9 500 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 FAM171BQ6P995 826 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 ANGPTL8Q6UXH0 198 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 OTOP2Q7RTS6 562 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 TMEM86AQ8N2M4 240 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 DACT3Q96B18 629 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 PPIL3Q9H2H8 161 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF304Q9HCX3 659 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 RAI2Q9Y5P3 530 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 MAGEB17A8MXT2 336 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 ATP6V1G2-DDX39BF2Z307 99 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 TRIM77I1YAP6 450 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 STX7O15400 261 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 PCDH7O60245 1069 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 EPN2O95208 641 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 THP07101 528 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 HBQ1P09105 142 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 IL32P24001 234 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF157P51786 506 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 LILRB1Q8NHL6 650 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 NPLOC4Q8TAT6 608 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 KATNAL1Q9BW62 490 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 COMMD3Q9UBI1 195 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 DHRS7Q9Y394 339 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 TSPAN4O14817 238 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 APOL3O95236 402 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC25A27O95847 323 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 LPOP22079 712 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 CHMP24386 653 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 TAF1AQ15573 450 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 PTRHD1Q6GMV3 140 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 DENND6BQ8NEG7 585 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 CREB3L4Q8TEY5 395 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 CDCA4Q9BXL8 241 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 PLEKHB1Q9UF11 243 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 FZD4Q9ULV1 537 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 AP3M1Q9Y2T2 418 aa12.93□□□□□ -0.34
CCDC88C-201ENST00000331194 TNFRSF10BO14763 440 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 CCNB2O95067 398 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 SOX14O95416 240 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 LAMP1P11279 417 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 EPORP19235 508 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 PSMA1P25786 263 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 HLA-DMAP28067 261 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 SDC2P34741 201 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 EIF4HQ15056 248 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 UGT8Q16880 541 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 CREB3L2Q70SY1 520 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 KRT73Q86Y46 540 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 NAGSQ8N159 534 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 C2orf69Q8N8R5 385 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 OR6J1Q8NGC5 347 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 SH3KBP1Q96B97 665 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 QRFPRQ96P65 431 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 POLR2J2Q9GZM3 115 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 CDCP1Q9H5V8 836 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 TPT1P8Q9HAU6 139 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 TLR8Q9NR97 1041 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 PLXNB2O15031 1838 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 GTPBP1O00178 669 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 BTN3A3O00478 584 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 PRAMEF11O60813 436 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 B3GALNT1O75752 331 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 EPOP01588 193 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 SCG5P05408 212 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF865P0CJ78 1059 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 EPB42P16452 691 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 GPX2P18283 190 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 CPN2P22792 545 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 HTR7P34969 479 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 PRIM2P49643 509 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 WNT3P56703 355 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 MGAT3Q09327 533 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 DUOXA1Q1HG43 343 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 ZXDCQ2QGD7 858 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 WSCD2Q2TBF2 565 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 XKRXQ6PP77 449 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF767PQ75MW2 155 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 NELL1Q92832 810 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 USP7Q93009 1102 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 EID2BQ96D98 161 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 SERPINB11Q96P15 392 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 B3GAT2Q9NPZ5 323 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 LATS2Q9NRM7 1088 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 EIF3KQ9UBQ5 218 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms