RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 NT5DC2Q9H857 520 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 MIEF1Q9NQG6 463 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CUEDC1Q9NWM3 386 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 PTTG2Q9NZH5 202 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CLEC1BQ9P126 229 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 WDR37Q9Y2I8 494 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 WBP11Q9Y2W2 641 aaKnown RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 U3KQV3 271 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 H7BY64 318 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CEACAM5P06731 702 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 NUDT7P0C024 238 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 PSMB5P28074 263 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TPP2P29144 1249 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TPD52P55327 224 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CYP4F2P78329 520 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 PPP1R8Q12972 351 aaKnown RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 C16orf72Q14CZ0 275 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TMEM196Q5HYL7 178 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 DEPDC1Q5TB30 811 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 THAP5Q7Z6K1 395 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 HORMAD1Q86X24 394 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 NAGSQ8N159 534 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 ANKRD53Q8N9V6 530 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 ADAMTS16Q8TE57 1224 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 FAM131CQ96AQ9 280 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TPD52L3Q96J77 140 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 PRAP1Q96NZ9 151 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 MBOAT4Q96T53 435 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 INSM2Q96T92 566 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 NRTNQ99748 197 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 GABRG3Q99928 467 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 RAB11FIP5Q9BXF6 653 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 MS4A8Q9BY19 250 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 BTBD1Q9H0C5 482 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 RAD21L1Q9H4I0 556 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TAS2R9Q9NYW1 312 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 MOSPD1Q9UJG1 213 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 ABCG2Q9UNQ0 655 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 KCNK6Q9Y257 313 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 SLC17A4Q9Y2C5 497 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CEPT1Q9Y6K0 416 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 MYO9BQ13459 2157 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3DA0A087WVF3 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3IA0A087WXS9 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3EA0A087X179 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3KA0A087X1G2 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 A0A1W2PPV9 198 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 A0A1W2PRB8 838 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3FA6NER0 549 aaPredicted RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 MYO1GB0I1T2 1018 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3LB9A6J9 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 H3BSA7 217 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 hCG_2039718K7EN88 272 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 PLPP1O14494 284 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 SUV39H1O43463 412 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 FUCA1P04066 466 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3HP0C7X1 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 DDX5P17844 614 aaKnown RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 PRKACGP22612 351 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 IGFALSP35858 605 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 CHI3L1P36222 383 aaPredicted RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 MAPK12P53778 367 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 ADPRHP54922 357 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 CTBSQ01459 385 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 ROR2Q01974 943 aaKnown RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 KRT33BQ14525 404 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3GQ6DHY5 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3CQ6IPX1 549 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TRIM40Q6P9F5 258 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 GPR141Q7Z602 305 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 VTCN1Q7Z7D3 282 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 TBC1D3Q8IZP1 549 aaPredicted RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 OR52N2Q8NGI0 321 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 CAMK1GQ96NX5 476 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 QRFPRQ96P65 431 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 SORBS1Q9BX66 1292 aaKnown RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 GABARAPL1Q9H0R8 117 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 IMP3Q9NV31 184 aaKnown RBP12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 RAPGEFL1Q9UHV5 662 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 GPSM3Q9Y4H4 160 aa12.37□□□□□ -0.43
SPTLC1-201ENST00000262554 PLXND1Q9Y4D7 1925 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 CACNB4O00305 520 aaPredicted RBP12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 CAPN5O15484 640 aaPredicted RBP12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 HOXB2P14652 356 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 CDH2P19022 906 aaPredicted RBP12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 DNAJA1P31689 397 aaKnown RBP12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 SHMT2P34897 504 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 RXRGP48443 463 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 PRIM2P49643 509 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 HLCSP50747 726 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 RAB28P51157 221 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 VLDLRP98155 873 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 RBBP4Q09028 425 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 FADDQ13158 208 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 KCNAB2Q13303 367 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 MLF2Q15773 248 aaPredicted RBP12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 MPEG1Q2M385 716 aa12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 ZC3H12BQ5HYM0 836 aaKnown RBP12.36□□□□□ -0.43
SPTLC1-201ENST00000262554 GCNT6Q5T4J0 391 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms