RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TLR6Q9Y2C9 796 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 CCDC88CQ9P219 2028 aa13.82□□□□□ -0.2
SDC1-201ENST00000254351 LEUTXA8MZ59 168 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ADAMDEC1O15204 470 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 NUPL2O15504 423 aaKnown RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 SYPP08247 313 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 IRF1P10914 325 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 SMSP52788 366 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 GPR19Q15760 415 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 HKDC1Q2TB90 917 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 WSCD2Q2TBF2 565 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 TRIQKQ629K1 86 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ZNF57Q68EA5 555 aaPredicted RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 IQCF1Q8N6M8 205 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ANKK1Q8NFD2 765 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 TRIB3Q96RU7 358 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 GDF15Q99988 308 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 TTLL2Q9BWV7 592 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 KCNN3Q9UGI6 736 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 NOD1Q9Y239 953 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 SLC45A1Q9Y2W3 748 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 DHRS7Q9Y394 339 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 MAP4K5Q9Y4K4 846 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ZFP37Q9Y6Q3 630 aaPredicted RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 CCL15-CCL14A0A0B4J2E2 113 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 RRN3P2A6NIE6 340 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 POLR1CO15160 346 aaPredicted RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 PTPN5P54829 565 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 RAB8AP61006 207 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 MRPL28Q13084 256 aaKnown RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 IL18Q14116 193 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 CCL15Q16663 113 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 TIMM50Q3ZCQ8 353 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 IQCCQ4KMZ1 466 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 MPPE1Q53F39 396 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 FAM171BQ6P995 826 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 TSEN54Q7Z6J9 526 aaKnown RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 LMNTD1Q8N9Z9 388 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ZFAND1Q8TCF1 268 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 SEPT5Q99719 369 aaPredicted RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 RABL2AQ9UBK7 228 aaPredicted RBP13.81□□□□□ -0.2
SDC1-201ENST00000254351 PCDHGA2Q9Y5H1 932 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 TEX46H3BTG2 121 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 H3BUI4 141 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 PLK4O00444 970 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 CDC42P60953 191 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 INSL4Q14641 139 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 DUOXA1Q1HG43 343 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.81□□□□□ -0.2
SDC1-201ENST00000254351 FBXO43Q4G163 708 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 LRRC73Q5JTD7 316 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 LRIF1Q5T3J3 769 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 NOXRED1Q6NXP6 359 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 FBXO32Q969P5 355 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 ZNF222Q9UK12 451 aa13.81□□□□□ -0.2
SDC1-201ENST00000254351 GSAPA4D1B5 854 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 ISM1B1AKI9 464 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 SAP18O00422 153 aaKnown RBP13.8□□□□□ -0.2
SDC1-201ENST00000254351 TNFRSF10BO14763 440 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 GASTP01350 101 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 SLC2A2P11168 524 aaPredicted RBP13.8□□□□□ -0.2
SDC1-201ENST00000254351 RPIAP49247 311 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 TAF10Q12962 218 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 LARS2Q15031 903 aaKnown RBP13.8□□□□□ -0.2
SDC1-201ENST00000254351 SPHARQ15513 63 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 TYW3Q6IPR3 259 aaKnown RBP13.8□□□□□ -0.2
SDC1-201ENST00000254351 THEM5Q8N1Q8 247 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 BRI3BPQ8WY22 251 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 MIXL1Q9H2W2 232 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 CTPS2Q9NRF8 586 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 RAB23Q9ULC3 237 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 HCN4Q9Y3Q4 1203 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 KLK4Q9Y5K2 254 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 A3GALT2U3KPV4 340 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 DNAH14Q0VDD8 3507 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 WASHC1A8K0Z3 465 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 CSO75390 466 aaKnown RBP13.8□□□□□ -0.2
SDC1-201ENST00000254351 RGS4P49798 205 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 GZMKP49863 264 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 GAB1Q13480 694 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 SLC35F1Q5T1Q4 408 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 OR2G6Q5TZ20 316 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 USP30Q70CQ3 517 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 PDZD3Q86UT5 571 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 PLPP6Q8IY26 295 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 ZNF683Q8IZ20 524 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 Q8N402 240 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 BEX1Q9HBH7 125 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 ASAH2Q9NR71 780 aa13.8□□□□□ -0.2
SDC1-201ENST00000254351 TRAV6A0A075B6T7 132 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SMIM35A0A1B0GVV1 85 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 MTX2O75431 263 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TNNI3P19429 210 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 ERP29P30040 261 aaKnown RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 DUSP28Q4G0W2 176 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 KRT73Q86Y46 540 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SLC37A3Q8NCC5 494 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 NFKBIDQ8NI38 313 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 GTF3C2Q8WUA4 911 aaPredicted RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 FOXJ1Q92949 421 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms