RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SLCO5A1Q9H2Y9 848 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NANOGQ9H9S0 305 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 C14orf119Q9NWQ9 140 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 LUZP4Q9P127 313 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZMYM5Q9UJ78 669 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GNG8Q9UK08 70 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FAM86B1E9PN63 330 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RNF13O43567 381 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NTSR2O95665 410 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TSPAN12O95859 305 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PBX3P40426 434 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF132P52740 706 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PRR5P85299 388 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 BTN1A1Q13410 526 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GLB1LQ6UWU2 654 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 KCTD20Q7Z5Y7 419 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TOP6BLQ8N6T0 577 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MFSD8Q8NHS3 518 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 AAASQ9NRG9 546 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 IL17RBQ9NRM6 502 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MS4A12Q9NXJ0 267 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 UBIAD1Q9Y5Z9 338 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SLC22A31A6NKX4 558 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 EGFP01133 1207 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 EPOP01588 193 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ANXA4P09525 319 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PIPP12273 146 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 LAMP2P13473 410 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ACVR2AP27037 513 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RPS19P39019 145 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 HCCSP53701 268 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TLE3Q04726 772 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 LAMTOR4Q0VGL1 99 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PLAG1Q6DJT9 500 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CXorf57Q6NSI4 855 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PRSS42Q7Z5A4 293 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ADCK2Q7Z695 626 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM200AQ86VY9 491 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PTRH1Q86Y79 214 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FATE1Q969F0 183 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TMED9Q9BVK6 235 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 KATNBL1Q9H079 304 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 IPPKQ9H8X2 491 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SCML1Q9UN30 329 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NOP16Q9Y3C1 178 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 M0QZK8 103 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GGCTO75223 188 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TSPAN15O95858 294 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CYB5AP00167 134 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RAF1P04049 648 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CD9P21926 228 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 IL1R2P27930 398 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RAB13P51153 203 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ERVK-21P61565 698 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ADIGQ0VDE8 80 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CRB2Q5IJ48 1285 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 STEAP3Q658P3 488 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 METTL7BQ6UX53 244 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ASB18Q6ZVZ8 466 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZFAND4Q86XD8 727 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 HS6ST3Q8IZP7 471 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 STPG2Q8N412 459 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ZBTB2Q8N680 514 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RAD9AQ99638 391 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CARS2Q9HA77 564 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TIGARQ9NQ88 270 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 STARD7Q9NQZ5 370 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MYEF2Q9P2K5 600 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PCDHGA7Q9Y5G6 932 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CSNK1G3Q9Y6M4 447 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 C3P01024 1663 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 C17orf113A0A1B0GUU1 675 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 A0A1W2PQ09 198 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PLATP00750 562 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 BCL2L1Q07817 233 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 Q3C1V9 767 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 XKR6Q5GH73 641 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SLC27A4Q6P1M0 643 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NELL2Q99435 816 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 OMDQ99983 421 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SAP130Q9H0E3 1048 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ISYNA1Q9NPH2 558 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PLCXD1Q9NUJ7 323 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MED17Q9NVC6 651 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NLKQ9UBE8 527 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FBXL4Q9UKA2 621 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GTF2A1LQ9UNN4 478 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PIN4Q9Y237 131 aaKnown RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 MROH6A6NGR9 719 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NCK1P16333 377 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RHOQP17081 205 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 CRISP1P54107 249 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ERVK-25P63136 954 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 SPRED3Q2MJR0 410 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 GSG1LQ6UXU4 331 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 LYSMD3Q7Z3D4 306 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 RAB3CQ96E17 227 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NKX6-2Q9C056 277 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 AIG1Q9NVV5 245 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms