RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CCT8P50990 548 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 PWP1Q13610 501 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 LPAL2Q16609 132 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 UGT8Q16880 541 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 HKDC1Q2TB90 917 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 PGM2L1Q6PCE3 622 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 ASPGQ86U10 573 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 ULK2Q8IYT8 1036 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 C16orf78Q8WTQ4 265 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 GFM2Q969S9 779 aaKnown RBP17.57■□□□□ 0.4
CLN3-254ENST00000637050 LOXL4Q96JB6 756 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 QRFPRQ96P65 431 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 TRAPPC9Q96Q05 1148 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 MACROD1Q9BQ69 325 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 EPB41L1Q9H4G0 881 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 DDX31Q9H8H2 851 aaKnown RBP17.57■□□□□ 0.4
CLN3-254ENST00000637050 C1GALT1Q9NS00 363 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 GID8Q9NWU2 228 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 CROTQ9UKG9 612 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 PADI4Q9UM07 663 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 A0A0J9YVX5 310 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 FXYD1O00168 92 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 SCAMP2O15127 329 aaKnown RBP17.56■□□□□ 0.4
CLN3-254ENST00000637050 CAPN5O15484 640 aaPredicted RBP17.56■□□□□ 0.4
CLN3-254ENST00000637050 PRAMEF10O60809 474 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 EPN2O95208 641 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 CER1O95813 267 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 NPPAP01160 153 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 STATHP02808 62 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 ST6GAL1P15907 406 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 CDH3P22223 829 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 ALDH4A1P30038 563 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 S100A3P33764 101 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 PSME3P61289 254 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 STXBP1P61764 594 aaKnown RBP17.56■□□□□ 0.4
CLN3-254ENST00000637050 PHC1P78364 1004 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 TOR1AIP1Q5JTV8 583 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 CCNYL2Q5T2Q4 361 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 OR4C11Q6IEV9 310 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 IRGCQ6NXR0 463 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 SLC2A7Q6PXP3 512 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 NUDT13Q86X67 352 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 SCUBE1Q8IWY4 988 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 OR2L5Q8NG80 312 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 CLPTM1LQ96KA5 538 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 GPATCH1Q9BRR8 931 aaKnown RBP17.56■□□□□ 0.4
CLN3-254ENST00000637050 EXO1Q9UQ84 846 aaKnown RBP17.56■□□□□ 0.4
CLN3-254ENST00000637050 DNAH14Q0VDD8 3507 aa17.56■□□□□ 0.4
CLN3-254ENST00000637050 IGHV1OR21-1A0A087WYE8 117 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 SYPP08247 313 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 NUBP1P53384 320 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 PLA2G16P53816 162 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 OR1D5P58170 312 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 SRSF11Q05519 484 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 RGS1Q08116 209 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 NFYCQ13952 458 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 TRMT5Q32P41 509 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 FAM71E1Q6IPT2 247 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 ABHD17CQ6PCB6 329 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 BNC2Q6ZN30 1099 aaPredicted RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 IKBIPQ70UQ0 350 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 CAMKMTQ7Z624 323 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MINDY1Q8N5J2 469 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 C19orf47Q8N9M1 422 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 FAM13CQ8NE31 585 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 SRFBP1Q8NEF9 429 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 OR7A2PQ8NGA2 310 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 CDC26Q8NHZ8 85 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 LRRC58Q96CX6 371 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 TEFMQ96QE5 360 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 OR52E6Q96RD3 313 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 CDRT15Q96T59 188 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MAP3K3Q99759 626 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 HOPXQ9BPY8 73 aaPredicted RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 C17orf62Q9BQA9 187 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 YY1AP1Q9H869 796 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 PRDM7Q9NQW5 492 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 WBP11Q9Y2W2 641 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 USP34Q70CQ2 3546 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MDC1Q14676 2089 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 LOC105369274A0A096LPK9 316 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 LOC102723532A0A0G2JNH3 316 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 C4orf51C9J302 202 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 ERI3O43414 337 aaKnown RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 SLC35G6P0C7Q6 338 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MYF5P13349 255 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 HPCAL1P37235 193 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MPLP40238 635 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 TAS2R50P59544 299 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 ELF3P78545 371 aaPredicted RBP17.55■□□□□ 0.4
CLN3-254ENST00000637050 FOXM1Q08050 763 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MAPKAPK3Q16644 382 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 PGS1Q32NB8 556 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 FRMPD2BQ6IN97 320 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 MSANTD1Q6ZTZ1 278 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 OR4N4Q8N0Y3 316 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 TMEM132CQ8N3T6 1108 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 FAM181AQ8N9Y4 354 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 OR8J2Q8NGG1 315 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 GTF2H4Q92759 462 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms