RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 IDNKQ5T6J7 187 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 SNX20Q7Z614 316 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 Q8N402 240 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 PSKH2Q96QS6 385 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CAPN10Q9HC96 672 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 FOCADQ5VW36 1801 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 INMT-MINDY4F8WBC2 141 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 SMLR1H3BR10 107 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 OR7A17O14581 309 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 MAP2K3P46734 347 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 MANFP55145 182 aaKnown RBP10.65□□□□□ -0.7
CLN3-244ENST00000636147 CAV3P56539 151 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 E2F2Q14209 437 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 NADSYN1Q6IA69 706 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 NAGSQ8N159 534 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 OR6C4Q8NGE1 309 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 PIGKQ92643 395 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 KCNN1Q92952 543 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 SNX18Q96RF0 628 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 TSPAN18Q96SJ8 248 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 DOHHQ9BU89 302 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 C2orf49Q9BVC5 232 aaPredicted RBP10.65□□□□□ -0.7
CLN3-244ENST00000636147 ACPTQ9BZG2 426 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 CACNA1CQ13936 2221 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 IGSF6O95976 241 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 RPL17P18621 184 aaKnown RBP10.65□□□□□ -0.7
CLN3-244ENST00000636147 SDC1P18827 310 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 PTNP21246 168 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 SPAM1P38567 509 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 ACLYP53396 1101 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 CDK10Q15131 360 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 RAB41Q5JT25 222 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 ATAT1Q5SQI0 421 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 SLC46A3Q7Z3Q1 461 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 LACC1Q8IV20 430 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 ADGRG2Q8IZP9 1017 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 YIPF7Q8N8F6 280 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 CCDC32Q9BV29 185 aa10.65□□□□□ -0.7
CLN3-244ENST00000636147 PPIL3Q9H2H8 161 aaKnown RBP10.65□□□□□ -0.7
CLN3-244ENST00000636147 EIF3KQ9UBQ5 218 aaKnown RBP10.65□□□□□ -0.7
CLN3-244ENST00000636147 HOXC11O43248 304 aaPredicted RBP10.65□□□□□ -0.71
CLN3-244ENST00000636147 UGT2B17O75795 530 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 NNMTP40261 264 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 PIK3CBP42338 1070 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 TGM4P49221 684 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 RAB8AP61006 207 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 UPP1Q16831 310 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 GPAT3Q53EU6 434 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 BICRALQ6AI39 1079 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 ZNF367Q7RTV3 350 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 MARCH9Q86YJ5 346 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 DNAJC22Q8N4W6 341 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 ZNF671Q8TAW3 534 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 ZNF431Q8TF32 576 aaPredicted RBP10.65□□□□□ -0.71
CLN3-244ENST00000636147 ASB15Q8WXK1 588 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 RAB8BQ92930 207 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 YIPF6Q96EC8 236 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 C1orf74Q96LT6 269 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 TBX5Q99593 518 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 CDADC1Q9BWV3 514 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 SLC6A13Q9NSD5 602 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 SEC14L4Q9UDX3 406 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 TMEFF2Q9UIK5 374 aaPredicted RBP10.65□□□□□ -0.71
CLN3-244ENST00000636147 RPL36Q9Y3U8 105 aaKnown RBP10.65□□□□□ -0.71
CLN3-244ENST00000636147 SESN1Q9Y6P5 492 aa10.65□□□□□ -0.71
CLN3-244ENST00000636147 KIAA1217Q5T5P2 1943 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 PLD2O14939 933 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 SEPT4O43236 478 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 PCDH7O60245 1069 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 C6orf47O95873 294 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 ERP29P30040 261 aaKnown RBP10.64□□□□□ -0.71
CLN3-244ENST00000636147 CDH4P55283 916 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 PRKCDQ05655 676 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 CBLBQ13191 982 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 HEPACAMQ14CZ8 416 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 TBCEQ15813 527 aaPredicted RBP10.64□□□□□ -0.71
CLN3-244ENST00000636147 KIAA1161Q6NSJ0 714 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 C8orf82Q6P1X6 216 aaPredicted RBP10.64□□□□□ -0.71
CLN3-244ENST00000636147 NPAS3Q8IXF0 933 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 ATP6V1C2Q8NEY4 427 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 GPR150Q8NGU9 434 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 RNF121Q9H920 327 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 SLX4Q8IY92 1834 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 A0A1B0GVC2 190 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 A0A1B0GVM2 712 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 A6NIN4 97 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 ARHGAP33O14559 1287 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 MPZL2O60487 215 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 GGT2P36268 569 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 HTR3AP46098 478 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 ASMTP46597 345 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 CLCN4P51793 760 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 HSPB3Q12988 150 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 LEXMQ3ZCV2 418 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 CTSL3PQ5NE16 218 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 ALKAL1Q6UXT8 129 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 SHFQ7M4L6 423 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 RNF130Q86XS8 419 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 GPC2Q8N158 579 aa10.64□□□□□ -0.71
CLN3-244ENST00000636147 CPPED1Q9BRF8 314 aaPredicted RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms