RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TLE2Q04725 743 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 EEF1A2Q05639 463 aaKnown RBP12.27□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF763Q0D2J5 394 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 CBX3Q13185 183 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 PPIGQ13427 754 aaKnown RBP eCLIP12.27□□□□□ -0.45
LINC00540-203ENST00000631321 PAGE2BQ5JRK9 111 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 GCNT6Q5T4J0 391 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 SLC39A5Q6ZMH5 540 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 DNAJC22Q8N4W6 341 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 FOPNLQ96NB1 174 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 FEVQ99581 238 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 PSD2Q9BQI7 771 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 COPS4Q9BT78 406 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 EPHX3Q9H6B9 360 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 TMEM38AQ9H6F2 299 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 ARMC7Q9H6L4 198 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 TRNAU1APQ9NX07 287 aaKnown RBP12.27□□□□□ -0.45
LINC00540-203ENST00000631321 SH3BP4Q9P0V3 963 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 FAM8A1Q9UBU6 413 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 TBX21Q9UL17 535 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 OGDHLQ9ULD0 1010 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 PCDHGA2Q9Y5H1 932 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 GNG14A0A1W2PPG7 69 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 C1orf105O95561 183 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 NTRK1P04629 796 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 HLA-EP13747 358 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ANXA8P13928 327 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TYRP14679 529 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TGM1P22735 817 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 MMP12P39900 470 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 RPS3AP61247 264 aaKnown RBP12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TUBA1BP68363 451 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 HBA1P69905 142 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TMEM115Q12893 351 aaPredicted RBP12.26□□□□□ -0.45
LINC00540-203ENST00000631321 IFI44LQ53G44 452 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF805Q5CZA5 627 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 COX20Q5RI15 118 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TMEM236Q5W0B7 351 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 GPR153Q6NV75 609 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TUBA1AQ71U36 451 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 P3H2Q8IVL5 708 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 LAS2Q8IYD9 372 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 SLC5A8Q8N695 610 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 KREMEN2Q8NCW0 462 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 GPR156Q8NFN8 814 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 OR10G2Q8NGC3 310 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 RPL3LQ92901 407 aaKnown RBP12.26□□□□□ -0.45
LINC00540-203ENST00000631321 MYDGFQ969H8 173 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 SAMD11Q96NU1 681 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 KCNC2Q96PR1 638 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 RAD9AQ99638 391 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 SPHK2Q9NRA0 654 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ATAD3AQ9NVI7 634 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 POFUT2Q9Y2G5 429 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 EFCAB9A8MZ26 197 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 M0R082 166 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 VIPP01282 170 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ALOX5P09917 674 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ETFAP13804 333 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 GABRB1P18505 474 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 DDX6P26196 483 aaKnown RBP eCLIP12.26□□□□□ -0.45
LINC00540-203ENST00000631321 PDHA2P29803 388 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 LIPAP38571 399 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 RPL3P39023 403 aaKnown RBP12.26□□□□□ -0.45
LINC00540-203ENST00000631321 VASPP50552 380 aaPredicted RBP12.26□□□□□ -0.45
LINC00540-203ENST00000631321 MICAQ29983 383 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF852Q6ZMS4 543 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ARMCX6Q7L4S7 300 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 COMMD6Q7Z4G1 85 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 NRSN1Q8IZ57 195 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 SPPL2AQ8TCT8 520 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF480Q8WV37 535 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 MYLIPQ8WY64 445 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 LRIG1Q96JA1 1093 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 EFCAB11Q9BUY7 163 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 SGPP1Q9BX95 441 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 EHD1Q9H4M9 534 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 TESMINQ9Y4I5 508 aa12.26□□□□□ -0.45
LINC00540-203ENST00000631321 NUP214P35658 2090 aaPredicted RBP12.25□□□□□ -0.45
LINC00540-203ENST00000631321 PRAMEF25A6NGN4 478 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 CLCA1A8K7I4 914 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF197O14709 1029 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 GPR37L1O60883 481 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 SH3BGRLO75368 114 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 CDK1P06493 297 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 FURINP09958 794 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 NPPBP16860 134 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 POLR2EP19388 210 aaKnown RBP12.25□□□□□ -0.45
LINC00540-203ENST00000631321 CRATP43155 626 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 EPHA5P54756 1037 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 SCARB2Q14108 478 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 TRIM60Q495X7 471 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 BCL7AQ4VC05 210 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 CRB2Q5IJ48 1285 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 PERM1Q5SV97 790 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 FAM71E1Q6IPT2 247 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 TMEM220Q6QAJ8 160 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 LIPIQ6XZB0 460 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 Q6ZPB1 254 aaPredicted RBP12.25□□□□□ -0.45
LINC00540-203ENST00000631321 OTOP2Q7RTS6 562 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms