RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 IL12RB1P42701 662 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 CDC42P60953 191 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 SELENOWP63302 87 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 NKX3-2P78367 333 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 PCDH1Q08174 1060 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 PTGES3Q15185 160 aaKnown RBP13.58□□□□□ -0.24
LDB3-209ENST00000623056 FAM110CQ1W6H9 321 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 HKDC1Q2TB90 917 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 PAMR1Q6UXH9 720 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 PLEKHH3Q7Z736 793 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 BBS7Q8IWZ6 715 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 RBFAQ8N0V3 343 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 RNF175Q8N4F7 328 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 GPR63Q9BZJ6 419 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 FAM120CQ9NX05 1096 aaKnown RBP13.58□□□□□ -0.24
LDB3-209ENST00000623056 TRPV2Q9Y5S1 764 aa13.58□□□□□ -0.24
LDB3-209ENST00000623056 ZFP37Q9Y6Q3 630 aaPredicted RBP13.58□□□□□ -0.24
LDB3-209ENST00000623056 IQCMA0A1B0GVH7 501 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ZNF670-ZNF695F2Z2N8 137 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CBX4O00257 560 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ARHGEF9O43307 516 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CYP17A1P05093 508 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ANXA5P08758 320 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CCNYL3P0C7X3 344 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CKMT1AP12532 417 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 HLA-DMAP28067 261 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 PCGF2P35227 344 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CRYBB2P43320 205 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 KIR2DL3P43628 341 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 OR1E2P47887 323 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 GZMKP49863 264 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 BOP1Q14137 746 aaKnown RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 VEPH1Q14D04 833 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 LARS2Q15031 903 aaKnown RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 PTCHD3Q3KNS1 767 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 HOMEZQ8IX15 550 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 UBE2J2Q8N2K1 259 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 TTC9BQ8N6N2 239 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CDC26Q8NHZ8 85 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CSGALNACT1Q8TDX6 532 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 DEDD2Q8WXF8 326 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 SH3KBP1Q96B97 665 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 SPATA9Q9BWV2 254 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ZNF717Q9BY31 904 aaPredicted RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 ZNF556Q9HAH1 456 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ABCB9Q9NP78 766 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 CLN6Q9NWW5 311 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 LSM2Q9Y333 95 aaKnown RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 TDRD15B5MCY1 1934 aaKnown RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 A0A1W2PQ72 361 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 GAPDHSO14556 408 aaPredicted RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 LAMP1P11279 417 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ACPPP15309 386 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 PTX3P26022 381 aaPredicted RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 RPS24P62847 133 aaKnown RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 RHAGQ02094 409 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 MXD1Q05195 221 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 RING1Q06587 406 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 TWF1Q12792 350 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 TAF10Q12962 218 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 QPRTQ15274 297 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 GGTA1PQ4G0N0 100 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 XKRXQ6PP77 449 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 GDPGP1Q6ZNW5 385 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 PTCHD4Q6ZW05 846 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 BPHLQ86WA6 291 aaPredicted RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 PLCZ1Q86YW0 608 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 OR8J2Q8NGG1 315 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 GTPBP3Q969Y2 492 aaKnown RBP13.57□□□□□ -0.24
LDB3-209ENST00000623056 MAP6Q96JE9 813 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 MIXL1Q9H2W2 232 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 ARL15Q9NXU5 204 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 SEC14L4Q9UDX3 406 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 KLHL21Q9UJP4 597 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 PCDHB8Q9UN66 801 aa13.57□□□□□ -0.24
LDB3-209ENST00000623056 PCM1Q15154 2024 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 H3BNC9 293 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 PCDH17O14917 1159 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 SEC14L5O43304 696 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 IGHA2P01877 340 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 PSMA1P25786 263 aaKnown RBP13.56□□□□□ -0.24
LDB3-209ENST00000623056 HMGCLP35914 325 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 ALDH9A1P49189 494 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 ZNF157P51786 506 aaPredicted RBP13.56□□□□□ -0.24
LDB3-209ENST00000623056 TARDBPQ13148 414 aaKnown RBP eCLIP13.56□□□□□ -0.24
LDB3-209ENST00000623056 TNK1Q13470 666 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 RGNQ15493 299 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 ZXDCQ2QGD7 858 aaPredicted RBP13.56□□□□□ -0.24
LDB3-209ENST00000623056 PDZK1Q5T2W1 519 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 SAXO2Q658L1 398 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 DPY19L3Q6ZPD9 716 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 CAMKK1Q8N5S9 505 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 OR4M1Q8NGD0 313 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 BTN2A2Q8WVV5 523 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 NECTIN4Q96NY8 510 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 FAM129BQ96TA1 746 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 COPS8Q99627 209 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 TMEM245Q9H330 911 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 FAM83DQ9H4H8 585 aa13.56□□□□□ -0.24
LDB3-209ENST00000623056 ASB8Q9H765 288 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms