RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SMIM10L1P0DMW3 83 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 LIFP15018 202 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 HPDP32754 393 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 DLSTP36957 453 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 OR1D4P47884 311 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 TLE3Q04726 772 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 HERC3Q15034 1050 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 ADPRMQ3LIE5 342 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 TOR1AIP1Q5JTV8 583 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 C10orf62Q5T681 223 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 ABHD13Q7L211 337 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 SYVN1Q86TM6 617 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 METTL27Q8N6F8 245 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 SMIM10Q96HG1 83 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 CNDP1Q96KN2 507 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 CCNL2Q96S94 520 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 MS4A8Q9BY19 250 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 GPR87Q9BY21 358 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 KLHL31Q9H511 634 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 ANKHQ9HCJ1 492 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 ZNF304Q9HCX3 659 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 WDR70Q9NW82 654 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 ZNF446Q9NWS9 450 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 IFT80Q9P2H3 777 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 MAU2Q9Y6X3 613 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 AKAP13Q12802 2813 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 ZZEF1O43149 2961 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 UBFD1O14562 309 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 SEC16AO15027 2179 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 BIRC5O15392 142 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 URB1O60287 2271 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 NSA2O95478 260 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 ESRRBO95718 433 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 ZNF888P0CJ79 500 aaPredicted RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 ALOX12P18054 663 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 IL1RNP18510 177 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 F8A1P23610 371 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 HNRNPH1P31943 449 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 AVPR1BP47901 424 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 PHEXP78562 749 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 ACACAQ13085 2346 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 SRSF6Q13247 344 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 NCF4Q15080 339 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 TTMPQ5BVD1 217 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 ARHGAP40Q5TG30 622 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 FRG2Q64ET8 278 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 NIPAL1Q6NVV3 410 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 COX15Q7KZN9 410 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 OVCH1Q7RTY7 1134 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 NUDCD3Q8IVD9 361 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 GOLGA6L1Q8N7Z2 621 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 OR9A4Q8NGU2 314 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 AGAP11Q8TF27 550 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 SREK1Q8WXA9 508 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 GAL3ST3Q96A11 431 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 COL26A1Q96A83 441 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 FKBP10Q96AY3 582 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 MS4A6EQ96DS6 147 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 MMABQ96EY8 250 aaPredicted RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 FRG2BQ96QU4 278 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 TRMOQ9BU70 441 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 DMRT3Q9NQL9 472 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 PSD3Q9NYI0 1048 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 KCND3Q9UK17 655 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 FARSAQ9Y285 508 aaKnown RBP18.36■□□□□ 0.53
UPF1-209ENST00000600310 PCDHGA6Q9Y5G7 932 aa18.36■□□□□ 0.53
UPF1-209ENST00000600310 FOXE1O00358 373 aaPredicted RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 FFAR3O14843 346 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 GPR42O15529 346 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 NPHS1O60500 1241 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 KLHL18O94889 574 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 TGFB1P01137 390 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 ALBP02768 609 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 ENO1P06733 434 aaKnown RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 CD63P08962 238 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 ITPKBP27987 946 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 CCR10P46092 362 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 RPS15P62841 145 aaKnown RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 DDX39BQ13838 428 aaKnown RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 DSG2Q14126 1118 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 BROXQ5VW32 411 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 MLIPQ5VWP3 458 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 TTC19Q6DKK2 380 aaPredicted RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 MRPL14Q6P1L8 145 aaKnown RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 PRSS41Q7RTY9 318 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 PDSS2Q86YH6 399 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 CDYL2Q8N8U2 506 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 AMER3Q8N944 861 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 ANKRD42Q8N9B4 389 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 OR2L5Q8NG80 312 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 OR6Y1Q8NGX8 325 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 CMTM7Q96FZ5 175 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 MTERF1Q99551 399 aaKnown RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 SLC29A3Q9BZD2 475 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 REXO4Q9GZR2 422 aaKnown RBP18.35■□□□□ 0.53
UPF1-209ENST00000600310 ACBD3Q9H3P7 528 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 MID1IP1Q9NPA3 183 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 IL17BQ9UHF5 180 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 PPT2Q9UMR5 302 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms