RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SARGQ9BW04 601 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 XKR8Q9H6D3 395 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 TPT1P8Q9HAU6 139 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 CD93Q9NPY3 652 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 DCAF13Q9NV06 445 aaKnown RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 SPASTQ9UBP0 616 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 SNX7Q9UNH6 387 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 EXO1Q9UQ84 846 aaKnown RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 BTBD3Q9Y2F9 522 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 AP4B1Q9Y6B7 739 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 LRP4O75096 1905 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 H0Y8X5 98 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 SAP18O00422 153 aaKnown RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 PLPP1O14494 284 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 NDUFS4O43181 175 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 TPST1O60507 370 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 GPR37L1O60883 481 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 CHRNB1P11230 501 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 TPP2P29144 1249 aaPredicted RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 SOX11P35716 441 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 AHRP35869 848 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 ACTR1BP42025 376 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 MAPK12P53778 367 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 ACTR1AP61163 376 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 TRA2BP62995 288 aaKnown RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 ILF3Q12906 894 aaKnown RBP eCLIP13.57□□□□□ -0.24
LIG3-205ENST00000585941 VEZF1Q14119 521 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 HEPACAMQ14CZ8 416 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 PDK3Q15120 406 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 ANKRD26P1Q6NSI1 321 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 Q6ZSR6 202 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 GPR155Q7Z3F1 870 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 RD3Q7Z3Z2 195 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 ADCK2Q7Z695 626 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 AMIGO1Q86WK6 493 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 NUDT13Q86X67 352 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 APLFQ8IW19 511 aaPredicted RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 CLECL1Q8IZS7 167 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 MFSD2AQ8NA29 543 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 OR4A15Q8NGL6 344 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 LCN9Q8WX39 176 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 TSACCQ96A04 125 aaPredicted RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 RAD21L1Q9H4I0 556 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 MIEF1Q9NQG6 463 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 AASDHPPTQ9NRN7 309 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 SCHIP1Q9P0W5 487 aaPredicted RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 DUSP12Q9UNI6 340 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 SAMD4AQ9UPU9 718 aaKnown RBP13.57□□□□□ -0.24
LIG3-205ENST00000585941 PCDHGA2Q9Y5H1 932 aa13.57□□□□□ -0.24
LIG3-205ENST00000585941 C1orf226A1L170 272 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 YY2O15391 372 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 CLOCKO15516 846 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 ZNF217O75362 1048 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 RASGRP1O95267 797 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 B3GALT4O96024 378 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 TNFP01375 233 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 IGHV4-34P06331 123 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 LYNP07948 512 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 F3P13726 295 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 BSGP35613 385 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 VMACQ2NL98 169 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 ALG11Q2TAA5 492 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 TMEM154Q6P9G4 183 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 SPRED1Q7Z699 444 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 OR2L3Q8NG85 312 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 HLA-CQ95604 372 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 F2RL3Q96RI0 385 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 CA5BQ9Y2D0 317 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 XIRP2A4UGR9 3374 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 IGKV1-8A0A0C4DH67 115 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 FEZF1A0PJY2 475 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 A6NCN8 305 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 KLHL18O94889 574 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 PRSS23O95084 383 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 KCNK5O95279 499 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 TBX6O95947 436 aaPredicted RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 GBAP04062 536 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 IL3P08700 152 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 DDCP20711 480 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 CYP4F2P78329 520 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 NRF1Q16656 503 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 TPRG1LQ5T0D9 272 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 ZCCHC8Q6NZY4 707 aaKnown RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 Q6ZS52 159 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 SRFBP1Q8NEF9 429 aaKnown RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 FLCNQ8NFG4 579 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 TSTD1Q8NFU3 115 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 ZFP90Q8TF47 636 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 SLC47A1Q96FL8 570 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 TOE1Q96GM8 510 aaKnown RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 NRTNQ99748 197 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 ZNF717Q9BY31 904 aaPredicted RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 TMEM168Q9H0V1 697 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 C6orf106Q9H6K1 298 aaPredicted RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 DDX31Q9H8H2 851 aaKnown RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 WSB2Q9NYS7 404 aaPredicted RBP13.56□□□□□ -0.24
LIG3-205ENST00000585941 RPS6KA6Q9UK32 745 aa13.56□□□□□ -0.24
LIG3-205ENST00000585941 RNF103-CHMP3A0A140T963 221 aa13.55□□□□□ -0.24
LIG3-205ENST00000585941 SAC3D1A6NKF1 404 aa13.55□□□□□ -0.24
LIG3-205ENST00000585941 OR5K4A6NMS3 321 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms