RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 OTUD6AQ7L8S5 288 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 CHST3Q7LGC8 479 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ATP6V1E2Q96A05 226 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 VMP1Q96GC9 406 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 KLHL5Q96PQ7 755 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ABCG4Q9H172 646 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ACTL8Q9H568 366 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 NFKBIL1Q9UBC1 381 aaPredicted RBP4.43□□□□□ -1.7
NUP88-213ENST00000576862 POLLQ9UGP5 575 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 SMC3Q9UQE7 1217 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 IKBKGQ9Y6K9 419 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ADAMTS13Q76LX8 1427 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 EVC2Q86UK5 1308 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ALKQ9UM73 1620 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 PLEKHG1Q9ULL1 1385 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 TECPR2O15040 1411 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 HTATSF1O43719 755 aaKnown RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 RECQL5O94762 991 aaPredicted RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 CCDC175P0C221 793 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 UGT1A4P22310 534 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 PRKACGP22612 351 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 HLA-FP30511 346 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 OR3A2P47893 321 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 BPIFB3P59826 476 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 IRX3P78415 501 aaPredicted RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 CYCSP99999 105 aaKnown RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 ILF2Q12905 390 aaKnown RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 NFATC2Q13469 925 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 TRA2AQ13595 282 aaKnown RBP eCLIP4.42□□□□□ -1.7
NUP88-213ENST00000576862 CDH18Q13634 790 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 TMEM132DQ14C87 1099 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 PTPN14Q15678 1187 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 PPP1R21Q6ZMI0 780 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 ANKRD33Q7Z3H0 272 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 FAM219AQ8IW50 185 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 GTF3AQ92664 365 aaKnown RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 FER1L6-AS2Q96M78 137 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 NDNQ99608 321 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 EGFL8Q99944 293 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 PI4K2AQ9BTU6 479 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 KATNB1Q9BVA0 655 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 UPF3AQ9H1J1 476 aaKnown RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 XAB2Q9HCS7 855 aaKnown RBP4.42□□□□□ -1.7
NUP88-213ENST00000576862 COMMD8Q9NX08 183 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 PRDM4Q9UKN5 801 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 CSNK1G3Q9Y6M4 447 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 PPLO60437 1756 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 MYO3AQ8NEV4 1616 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 ARHGAP23Q9P227 1491 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 ZBED9Q6R2W3 1325 aa4.42□□□□□ -1.7
NUP88-213ENST00000576862 DLC1Q96QB1 1528 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 NSD3Q9BZ95 1437 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 TRBV4-1A0A0J9YWV2 114 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 MTMR11A4FU01 709 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 KPNA7A9QM74 516 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 EPM2AB3EWF7 344 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 SOCS3O14543 225 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 IGHEP01854 428 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 SERPING1P05155 500 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 CDC25CP30307 473 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 HSD17B3P37058 310 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 CALCOCO2Q13137 446 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 ENPP2Q13822 863 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 ZNF273Q14593 569 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 OPCMLQ14982 345 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 TAB1Q15750 504 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 C2CD6Q53TS8 623 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 C1orf141Q5JVX7 400 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 CTR9Q6PD62 1173 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 ABRAXAS1Q6UWZ7 409 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 CATSPER4Q7RTX7 472 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 RCOR2Q8IZ40 523 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 FAM89BQ8N5H3 189 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 ARL10Q8N8L6 244 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 LRTM2Q8N967 370 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 Q8NFD4 153 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 OR8H1Q8NGG4 311 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 C11orf45Q8TAV5 145 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 TSACCQ96A04 125 aaPredicted RBP4.41□□□□□ -1.7
NUP88-213ENST00000576862 CNDP2Q96KP4 475 aaKnown RBP4.41□□□□□ -1.7
NUP88-213ENST00000576862 C2orf48Q96LS8 159 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 ZMAT2Q96NC0 199 aaKnown RBP4.41□□□□□ -1.7
NUP88-213ENST00000576862 CDCA3Q99618 268 aaPredicted RBP4.41□□□□□ -1.7
NUP88-213ENST00000576862 NYXQ9GZU5 481 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 FN3KQ9H479 309 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 EGLN3Q9H6Z9 239 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 PDRG1Q9NUG6 133 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 RAI14Q9P0K7 980 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 THEGQ9P2T0 379 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 PA2G4Q9UQ80 394 aaKnown RBP4.41□□□□□ -1.7
NUP88-213ENST00000576862 MMP24Q9Y5R2 645 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 MED14O60244 1454 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 KIF1BO60333 1816 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 ARID2Q68CP9 1835 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 IGSF1Q8N6C5 1336 aa4.41□□□□□ -1.7
NUP88-213ENST00000576862 A0A1W2PP64 1363 aa4.4□□□□□ -1.7
NUP88-213ENST00000576862 ANKRD36BQ8N2N9 1353 aa4.4□□□□□ -1.7
NUP88-213ENST00000576862 FAM135BQ49AJ0 1406 aa4.4□□□□□ -1.7
NUP88-213ENST00000576862 PTPRUQ92729 1446 aa4.4□□□□□ -1.7
NUP88-213ENST00000576862 NRXN3Q9Y4C0 1643 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms