RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SH2D2AQ9NP31 389 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 ACKR4Q9NPB9 350 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 MALRD1Q5VYJ5 2156 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 LMX1BO60663 402 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 ADAM11O75078 769 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 FTLP02792 175 aaPredicted RBP14.91□□□□□ -0.02
VPS53-218ENST00000575207 PKMP14618 531 aaKnown RBP14.91□□□□□ -0.02
VPS53-218ENST00000575207 CLCN2P51788 898 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 RPS4XP62701 263 aaKnown RBP14.91□□□□□ -0.02
VPS53-218ENST00000575207 PDK2Q15119 407 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 IL20RBQ6UXL0 311 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 MILR1Q7Z6M3 343 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 CAND1Q86VP6 1230 aaKnown RBP14.91□□□□□ -0.02
VPS53-218ENST00000575207 CFAP61Q8NHU2 1237 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 SYT11Q9BT88 431 aa14.91□□□□□ -0.02
VPS53-218ENST00000575207 AARSD1Q9BTE6 412 aaKnown RBP14.91□□□□□ -0.02
VPS53-218ENST00000575207 TUBA8Q9NY65 449 aaPredicted RBP14.91□□□□□ -0.02
VPS53-218ENST00000575207 IGKV1-8A0A0C4DH67 115 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 TRBV11-1A0A0K0K1C0 115 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 A8MXE2 369 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 SGK494L7N484 410 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 OR6B1O95007 311 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 THBS1P07996 1170 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 NFKB1P19838 968 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 IGFBP5P24593 272 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 GJC1P36383 396 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 PDK1Q15118 436 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 HADHQ16836 314 aaKnown RBP14.9□□□□□ -0.02
VPS53-218ENST00000575207 VASNQ6EMK4 673 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 ZNF425Q6IV72 752 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 VRK3Q8IV63 474 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 MAP7D3Q8IWC1 876 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 RAD51AP1Q96B01 352 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 OXNAD1Q96HP4 312 aaPredicted RBP14.9□□□□□ -0.02
VPS53-218ENST00000575207 QRFPRQ96P65 431 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 SFXN3Q9BWM7 321 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 PRDM14Q9GZV8 571 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 SEMA4BQ9NPR2 832 aaPredicted RBP14.9□□□□□ -0.02
VPS53-218ENST00000575207 TAB2Q9NYJ8 693 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 SMARCAL1Q9NZC9 954 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 FBXW2Q9UKT8 454 aa14.9□□□□□ -0.02
VPS53-218ENST00000575207 SCN3AQ9NY46 2000 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 CCL22O00626 93 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 UBFD1O14562 309 aaKnown RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 PPP1R12AO14974 1030 aaPredicted RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 CCDC172P0C7W6 258 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 TMIGD3P0DMS9 266 aaPredicted RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 EZRP15311 586 aaKnown RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 ITGA2P17301 1181 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 IL1RNP18510 177 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 MC4RP32245 332 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 ARHGAP25P42331 645 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 DNASE1L1P49184 302 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 CSE1LP55060 971 aaKnown RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 CRYZQ08257 329 aaKnown RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 FOXF2Q12947 444 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 P3H1Q32P28 736 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 FAM47EQ6ZV65 393 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 TAS2R42Q7RTR8 314 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 CYP4X1Q8N118 509 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 PLD6Q8N2A8 252 aaKnown RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 LRRC17Q8N6Y2 441 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 PLD5Q8N7P1 536 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 ASB15Q8WXK1 588 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 SCYL1Q96KG9 808 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 MED18Q9BUE0 208 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 FSD1LQ9BXM9 530 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 RBCK1Q9BYM8 510 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 SLC6A15Q9H2J7 730 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 ZNF703Q9H7S9 590 aaPredicted RBP14.89□□□□□ -0.03
VPS53-218ENST00000575207 CMYA5Q8N3K9 4069 aa14.89□□□□□ -0.03
VPS53-218ENST00000575207 PRSS56P0CW18 603 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 MYBL1P10243 752 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 FERP16591 822 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 ZNF140P52738 457 aaPredicted RBP14.88□□□□□ -0.03
VPS53-218ENST00000575207 DBN1Q16643 649 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 ZNF750Q32MQ0 723 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 XKR6Q5GH73 641 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 TCP11X2Q5H9J9 407 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 FAM120AOSQ5T036 256 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 SH2D5Q6ZV89 423 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 IL17RELQ6ZVW7 336 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 PM20D2Q8IYS1 436 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 RAB42Q8N4Z0 105 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 GOLM1Q8NBJ4 401 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 TRIM11Q96F44 468 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 PEX11GQ96HA9 241 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 BTBD6Q96KE9 485 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 OLFM3Q96PB7 478 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 TIMP4Q99727 224 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 ACAT2Q9BWD1 397 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 C12orf65Q9H3J6 166 aaKnown RBP14.88□□□□□ -0.03
VPS53-218ENST00000575207 PIGMQ9H3S5 423 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 CALHM2Q9HA72 323 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 MRPS30Q9NP92 439 aaKnown RBP14.88□□□□□ -0.03
VPS53-218ENST00000575207 QPCTLQ9NXS2 382 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 IP6K2Q9UHH9 426 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 ZNF223Q9UK11 482 aaPredicted RBP14.88□□□□□ -0.03
VPS53-218ENST00000575207 LAMP3Q9UQV4 416 aa14.88□□□□□ -0.03
VPS53-218ENST00000575207 WIF1Q9Y5W5 379 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms