RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CRTC1Q6UUV9 634 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 LRRC70Q7Z2Q7 622 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 ELMOD1Q8N336 334 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 ST13P5Q8NFI4 369 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 DNAJB8Q8NHS0 232 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CIDECQ96AQ7 238 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 PLD4Q96BZ4 506 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 DIRAS2Q96HU8 199 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 FOPNLQ96NB1 174 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 STARD7Q9NQZ5 370 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 ABCB8Q9NUT2 735 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 TMEM45AQ9NWC5 275 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 PAQR5Q9NXK6 330 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 CFAP97Q9P2B7 532 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CLEC4EQ9ULY5 219 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CCNB2O95067 398 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 CD160O95971 181 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PAX3P23760 479 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 RGNQ15493 299 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 IQCCQ4KMZ1 466 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PYDC2Q56P42 97 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 Q6ZVL8 140 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 CELF5Q8N6W0 485 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 PPCDCQ96CD2 204 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 GPBP1L1Q9HC44 474 aaPredicted RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 PSORS1C1Q9UIG5 152 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 HSPE1-MOB4S4R3N1 261 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 TRBC2A0A5B9 178 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 ISPDA4D126 451 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 FAM47E-STBD1D6RA91 191 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 GGT2P36268 569 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 UGT2B15P54855 530 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 OLR1P78380 273 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 ZNF45Q02386 682 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 CCSMST1Q4G0I0 132 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 LIPKQ5VXJ0 399 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 ALG1LQ6GMV1 187 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 SLC46A3Q7Z3Q1 461 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PCSK9Q8NBP7 692 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 APH1BQ8WW43 257 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 RAB8BQ92930 207 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 MTERF3Q96E29 417 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PSD2Q9BQI7 771 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 TMEM246Q9BRR3 403 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 SP140LQ9H930 580 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 TVP23BQ9NYZ1 205 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PCDH10Q9P2E7 1040 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 CRNNQ9UBG3 495 aaPredicted RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 B4GALT6Q9UBX8 382 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 H7C0S8 307 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 YY2O15391 372 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 TSPAN19P0C672 248 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 ANXA8P13928 327 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 ATP6V1E1P36543 226 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PIK3CBP42338 1070 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 SNRPD1P62314 119 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 GPR33Q49SQ1 333 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PNCKQ6P2M8 343 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 Q6ZVU0 165 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 MEX3DQ86XN8 651 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 GALNT12Q8IXK2 581 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 LINC01599Q8WXQ3 324 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 ZNF566Q969W8 418 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 C1GALT1C1Q96EU7 318 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 PHOX2BQ99453 314 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 RRAGCQ9HB90 399 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 FAM120CQ9NX05 1096 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 TAS2R9Q9NYW1 312 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 TRPC4Q9UBN4 977 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 CFL2Q9Y281 166 aa13.94□□□□□ -0.18
VPS35-210ENST00000568784 TNS1Q9HBL0 1735 aaKnown RBP13.94□□□□□ -0.18
VPS35-210ENST00000568784 TRBV5-3A0A0A0MS03 114 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 HAT1O14929 419 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CATP04040 527 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 MRPL19P49406 292 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 PRKAG1P54619 331 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 KCNC4Q03721 635 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 ELAVL2Q12926 359 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 ZMAT1Q5H9K5 638 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 AGTRAPQ6RW13 159 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 TRMT11Q7Z4G4 463 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 GPR151Q8TDV0 419 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 HRASLS5Q96KN8 279 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 NECTIN4Q96NY8 510 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 POFUT2Q9Y2G5 429 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 SCN4AP35499 1836 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 A0A0G2JN53 185 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 IGFBP1P08833 259 aaPredicted RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 PSMA1P25786 263 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 CD70P32970 193 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CDK6Q00534 326 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 LYPLAL1Q5VWZ2 237 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 ZNF544Q6NX49 715 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 KLHL17Q6TDP4 642 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 ENKURQ8TC29 256 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 ASZ1Q8WWH4 475 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 SCLYQ96I15 445 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms