RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CCNYL2Q5T2Q4 361 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 AP1ARQ63HQ0 302 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PPP2R2DQ66LE6 453 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PDZD3Q86UT5 571 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 FAM124AQ86V42 546 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 LRRTM4Q86VH4 590 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 DCP2Q8IU60 420 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 CPA6Q8N4T0 437 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 CNIH3Q8TBE1 160 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 COX14Q96I36 57 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ZNF514Q96K75 400 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 LINC00615Q96LM1 132 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 RBM4BQ9BQ04 359 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 SLC35A5Q9BS91 424 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 EFCAB11Q9BUY7 163 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 RBM4Q9BWF3 364 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 HDAC8Q9BY41 377 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 RIBC2Q9H4K1 309 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 VCX3AQ9NNX9 186 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ITM2CQ9NQX7 267 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 IMP3Q9NV31 184 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 C17orf113A0A1B0GUU1 675 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 H0YAE9 185 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PRMT3O60678 531 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 TRMUO75648 421 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 TBX6O95947 436 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 HSD3B1P14060 373 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 HSD3B2P26439 372 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 SOAT1P35610 550 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 GALK1P51570 392 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 TUBA4AP68366 448 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 DLX2Q07687 328 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 FCHO2Q0JRZ9 810 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 RAB39AQ14964 217 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 IRF4Q15306 451 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ZNF765Q7L2R6 523 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 THAP5Q7Z6K1 395 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 LAS2Q8IYD9 372 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 C8orf59Q8N0T1 100 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 SDR16C5Q8N3Y7 309 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ANKRD53Q8N9V6 530 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ZNF555Q8NEP9 628 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 OR52J3Q8NH60 311 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 OR5K1Q8NHB7 308 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 OR14C36Q8NHC7 312 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 EZH1Q92800 747 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 UBE2FQ969M7 185 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PPCDCQ96CD2 204 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 COQ8BQ96D53 544 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 REPS1Q96D71 796 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 SLC6A16Q9GZN6 736 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 OCEL1Q9H607 264 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 REEP4Q9H6H4 257 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 CXorf21Q9HAI6 301 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 IL1RAPQ9NPH3 570 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PTTG2Q9NZH5 202 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PDP1Q9P0J1 537 aaPredicted RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 CDH7Q9ULB5 785 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ZFR2Q9UPR6 939 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 VPS13AQ96RL7 3174 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 CKAP5Q14008 2032 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 LOC100130705A0A1B0GUX0 176 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 SLC31A1O15431 190 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 PI15O43692 258 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 XPNPEP2O43895 674 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 MAN1A2O60476 641 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 GCM2O75603 506 aaPredicted RBP10.17□□□□□ -0.78
CUX1-217ENST00000558836 FABP3P05413 133 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 FURINP09958 794 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 FUT4P22083 530 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 NR4A1P22736 598 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 ESRRGP62508 458 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 CD47Q08722 323 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 TMEM31Q5JXX7 168 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 MFSD4BQ5TF39 518 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 OR2T5Q6IEZ7 315 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 TMEM26Q6ZUK4 368 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 RNF130Q86XS8 419 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 SLC44A2Q8IWA5 706 aaPredicted RBP10.17□□□□□ -0.78
CUX1-217ENST00000558836 ZC3H7AQ8IWR0 971 aaKnown RBP10.17□□□□□ -0.78
CUX1-217ENST00000558836 BPIFB6Q8NFQ5 453 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 OR2T29Q8NH02 315 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.17□□□□□ -0.786e-6■■■■■ 38.3
CUX1-217ENST00000558836 SPPL2AQ8TCT8 520 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 C8orf4Q9NR00 106 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 BAG5Q9UL15 447 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 SAMHD1Q9Y3Z3 626 aaKnown RBP10.17□□□□□ -0.78
CUX1-217ENST00000558836 SDK1Q7Z5N4 2213 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 KLHL33A6NCF5 533 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 COQ9O75208 318 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 HOXB3P14651 431 aaPredicted RBP10.17□□□□□ -0.78
CUX1-217ENST00000558836 DAPP51397 102 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 RAPSNQ13702 412 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 SLC5A12Q1EHB4 618 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 FAM46CQ5VWP2 391 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 METRNLQ641Q3 311 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 HORMAD1Q86X24 394 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 SYNPOQ8N3V7 929 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 AMER3Q8N944 861 aa10.17□□□□□ -0.78
CUX1-217ENST00000558836 LINC01555Q8NAE3 123 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms