RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 ZFYVE26Q68DK2 2539 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 A0A087X1B8 175 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TRBV5-4A0A0C4DH59 114 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TP73O15350 636 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 RASSF9O75901 435 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PIAS1O75925 651 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TMEM63AO94886 807 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TNFSF15O95150 251 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PRB1P04280 392 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PTMAP06454 111 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 APRTP07741 180 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ALPPL2P10696 532 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 XRCC1P18887 633 aaPredicted RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 HLA-DPA1P20036 260 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 KELP23276 732 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PSMA3P25788 255 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SLC5A2P31639 672 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 STIP1P31948 543 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 FOXN2P32314 431 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ABCG1P45844 678 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 DUSP3P51452 185 aaPredicted RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 CLCNKAP51800 687 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 MAPK10P53779 464 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 FOXL2P58012 376 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 DCDC1P59894 354 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 GNG11P61952 73 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 UBE2IP63279 158 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 CYP4F2P78329 520 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ILF3Q12906 894 aaKnown RBP eCLIP4.11□□□□□ -1.75
SPG11-211ENST00000558561 GPS1Q13098 491 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PRKG2Q13237 762 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 E2F2Q14209 437 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PRPSAP1Q14558 356 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 KCNJ11Q14654 390 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 KCNAB1Q14722 419 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TBCCQ15814 346 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 P3H1Q32P28 736 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 CCSMST1Q4G0I0 132 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 UBAP2Q5T6F2 1119 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 TSTD2Q5T7W7 516 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SEL1L2Q5TEA6 688 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 FAM69BQ5VUD6 431 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ICE2Q659A1 982 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SFRP4Q6FHJ7 346 aaPredicted RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 ITPRIPL1Q6GPH6 555 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PCSK4Q6UW60 755 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ABRAXAS1Q6UWZ7 409 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TIPARPQ7Z3E1 657 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 LRRTM4Q86VH4 590 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ZSCAN30Q86W11 494 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 LIX1LQ8IVB5 337 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 GALNT15Q8N3T1 639 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SFRP1Q8N474 314 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 FBXO39Q8N4B4 442 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 CCDC112Q8NEF3 446 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 CPT1BQ92523 772 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 RSC1A1Q92681 617 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SPSB4Q96A44 273 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 FKBP10Q96AY3 582 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 ELMO2Q96JJ3 720 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 RMDN2Q96LZ7 410 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SORCS2Q96PQ0 1159 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 VPS35Q96QK1 796 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 GFM1Q96RP9 751 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 WDR83Q9BRX9 315 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 FSD1LQ9BXM9 530 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 TSGA10Q9BZW7 698 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 SPRY4Q9C004 299 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 UNKQ9C0B0 810 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 TOR3AQ9H497 397 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 CPNE5Q9HCH3 593 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 EPB41L5Q9HCM4 733 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 NLE1Q9NVX2 485 aaPredicted RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 SLC17A6Q9P2U8 582 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PISDQ9UG56 409 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 PLAGL1Q9UM63 463 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 RUVBL2Q9Y230 463 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 KLHL20Q9Y2M5 609 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 AAR2Q9Y312 384 aaKnown RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 ANKRD11Q6UB99 2663 aaPredicted RBP4.11□□□□□ -1.75
SPG11-211ENST00000558561 SCN3AQ9NY46 2000 aa4.11□□□□□ -1.75
SPG11-211ENST00000558561 FER1L5A0AVI2 2057 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MDC1Q14676 2089 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 IGLV3-16A0A075B6K0 115 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 IGHV5-51A0A0C4DH38 117 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 LOC102723971A0A1B0GUV8 181 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MBD3L4A6NDZ8 208 aaPredicted RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 MBD3L3A6NE82 208 aaPredicted RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 GOLGA6L9A6NEM1 432 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MGAT4DA6NG13 374 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 C2orf81A6NN90 581 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PDZK1P1A8MUH7 402 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 CDRT15L2A8MXV6 281 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 D6RAR5 112 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 RAB27BO00194 218 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 BTN3A3O00478 584 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 KMOO15229 486 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MPPED1O15442 326 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 NUDT21O43809 227 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 VEGFDO43915 354 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms