RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 LAS2Q8IYD9 372 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 SHISA5Q8N114 240 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 AMER3Q8N944 861 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 L3MBTL4Q8NA19 623 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 OR7G3Q8NG95 312 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 UTP15Q8TED0 518 aaKnown RBP16.6■□□□□ 0.25
SHMT2-225ENST00000556798 UBE2E3Q969T4 207 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 MVB12AQ96EY5 273 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 SLC45A3Q96JT2 553 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 EFHD1Q9BUP0 239 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 MECRQ9BV79 373 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 NTMT1Q9BV86 223 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 YIPF2Q9BWQ6 316 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 GPR87Q9BY21 358 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 RHBGQ9H310 441 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 GSTO2Q9H4Y5 243 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 ANKHQ9HCJ1 492 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 OXSMQ9NWU1 459 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 CDC14AQ9UNH5 594 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 FARSAQ9Y285 508 aaKnown RBP16.6■□□□□ 0.25
SHMT2-225ENST00000556798 PCDHGA6Q9Y5G7 932 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 A0A0G2JN53 185 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 LRIT2A6NDA9 550 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 GOLGA6L10A6NI86 522 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 AGPSO00116 658 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 NKX2-8O15522 239 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 RDH16O75452 317 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 KLHL18O94889 574 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 NSA2O95478 260 aaKnown RBP16.59■□□□□ 0.25
SHMT2-225ENST00000556798 OTCP00480 354 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 PRKAR1AP10644 381 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ALOX12P18054 663 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 GSTM2P28161 218 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 CCR10P46092 362 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 NAGLUP54802 743 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 VAC14Q08AM6 782 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 IL10RAQ13651 578 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 DSG2Q14126 1118 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ZRSR2Q15696 482 aaKnown RBP16.59■□□□□ 0.25
SHMT2-225ENST00000556798 DEFB134Q4QY38 66 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ATP1A1-AS1Q5TC04 95 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 LIPMQ5VYY2 423 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 MRPL14Q6P1L8 145 aaKnown RBP16.59■□□□□ 0.25
SHMT2-225ENST00000556798 LETMD1Q6P1Q0 360 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 MILR1Q7Z6M3 343 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 AFAP1L2Q8N4X5 818 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 HUS1BQ8NHY5 278 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ZNF473Q8WTR7 871 aaKnown RBP16.59■□□□□ 0.25
SHMT2-225ENST00000556798 C17orf62Q9BQA9 187 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 TMBIM4Q9HC24 238 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 HCN3Q9P1Z3 774 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ZNF225Q9UK10 706 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 TCFL5Q9UL49 500 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 PTRH2Q9Y3E5 179 aaKnown RBP16.59■□□□□ 0.25
SHMT2-225ENST00000556798 NAALAD2Q9Y3Q0 740 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 SLC22A7Q9Y694 548 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 KMT2BQ9UMN6 2715 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ITPR1Q14643 2758 aa16.59■□□□□ 0.25
SHMT2-225ENST00000556798 ZNF891A8MT65 544 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 H0YIV9 168 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 K7ENP7 123 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 KLF7O75840 302 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 OR4F21O95013 312 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 ONECUT2O95948 504 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 PIM1P11309 404 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 ALDH3A1P30838 453 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 DNAJB13P59910 316 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 STXBP1P61764 594 aaKnown RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 OLR1P78380 273 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 LCP2Q13094 533 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 ERV3-1Q14264 604 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 HERC3Q15034 1050 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 NKG7Q16617 165 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 INO80CQ6PI98 192 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 SHISA6Q6ZSJ9 500 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 ABHD13Q7L211 337 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 OVCH1Q7RTY7 1134 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 HDXQ7Z353 690 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 SYVN1Q86TM6 617 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 PRSS58Q8IYP2 241 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 ZSCAN1Q8NBB4 408 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 OR5T3Q8NGG3 340 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 GAL3ST3Q96A11 431 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 FKBP10Q96AY3 582 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 MS4A6EQ96DS6 147 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 SEC16BQ96JE7 1060 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 F2RL3Q96RI0 385 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 MTERF1Q99551 399 aaKnown RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 MS4A8Q9BY19 250 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 STMN4Q9H169 189 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 SOX17Q9H6I2 414 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 SSU72Q9NP77 194 aaKnown RBP16.58■□□□□ 0.24
SHMT2-225ENST00000556798 DMRT3Q9NQL9 472 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 TRPC4Q9UBN4 977 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 PADI2Q9Y2J8 665 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 PCDHGA11Q9Y5H2 935 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 PCSK5Q92824 1860 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 CACNA1BQ00975 2339 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 LOC400499M0QZD8 3231 aa16.58■□□□□ 0.24
SHMT2-225ENST00000556798 MGAQ8IWI9 3026 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms