RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CCL5P13501 91 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 PRKACGP22612 351 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 MNDAP41218 407 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 CASP2P42575 452 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 ODF4Q2M2E3 257 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 XKR3Q5GH77 459 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 LYSMD4Q5XG99 296 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 SLC25A47Q6Q0C1 308 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 TMEM207Q6UWW9 146 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 RSRC2Q7L4I2 434 aaKnown RBP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 CEP57Q86XR8 500 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 DZIP1Q86YF9 867 aaKnown RBP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 TET1Q8NFU7 2136 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 OR11H4Q8NGC9 324 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 CCDC47Q96A33 483 aaKnown RBP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 C10orf90Q96M02 699 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 RAD9AQ99638 391 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 TRIM6Q9C030 488 aaPredicted RBP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 MMP27Q9H306 513 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 OSGEPL1Q9H4B0 414 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 SYNCQ9H7C4 482 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 TBC1D17Q9HA65 648 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 PIH1D3Q9NQM4 214 aaKnown RBP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 MAN2C1Q9NTJ4 1040 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 AATFQ9NY61 560 aaKnown RBP eCLIP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 SUCLA2Q9P2R7 463 aaPredicted RBP4.17□□□□□ -1.74
PRPF39-209ENST00000556353 TP53TG3Q9ULZ0 132 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 AGTPBP1Q9UPW5 1226 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 PPP2R2CQ9Y2T4 447 aa4.17□□□□□ -1.74
PRPF39-209ENST00000556353 FRYLO94915 3013 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 IGHV3OR16-10A0A075B7F0 116 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 OR2A25A4D2G3 310 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 EPM2AB3EWF7 344 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 CTDSP2O14595 271 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 EPHB6O15197 1021 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 IPO8O15397 1037 aaKnown RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 GLRA3O75311 464 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 C22orf31O95567 290 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 CAPN2P17655 700 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 LHCGRP22888 699 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 RBMS1P29558 406 aaKnown RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 PGFP49763 221 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 HMGCS2P54868 508 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 DYNLL1P63167 89 aaKnown RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 CALCOCO2Q13137 446 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 SPDYCQ5MJ68 293 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 PLEKHS1Q5SXH7 462 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 LCN1P1Q5VSP4 162 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 KRT79Q5XKE5 535 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 FAM180BQ6P0A1 224 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 LCA5Q86VQ0 697 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 TMEM173Q86WV6 379 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 ANKRD13CQ8N6S4 541 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 OR6S1Q8NH40 331 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 MAPK15Q8TD08 544 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 U2AF1L4Q8WU68 220 aaKnown RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 RASL10AQ92737 203 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 PAFAH2Q99487 392 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 SOSTQ9BQB4 213 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 KIFC3Q9BVG8 833 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 RAB11FIP5Q9BXF6 653 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 SHARPINQ9H0F6 387 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 SUDS3Q9H7L9 328 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 TEX10Q9NXF1 929 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 WSB2Q9NYS7 404 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-209ENST00000556353 MUTYHQ9UIF7 546 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 ADAMTS9Q9P2N4 1935 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 ABCA7Q8IZY2 2146 aa4.16□□□□□ -1.74
PRPF39-209ENST00000556353 MUC6Q6W4X9 2439 aa4.15□□□□□ -1.74
PRPF39-209ENST00000556353 ATG2AQ2TAZ0 1938 aa4.15□□□□□ -1.74
PRPF39-209ENST00000556353 PIEZO1Q92508 2521 aa4.15□□□□□ -1.74
PRPF39-209ENST00000556353 BAZ2BQ9UIF8 2168 aaKnown RBP4.15□□□□□ -1.75
PRPF39-209ENST00000556353 ENO4A6NNW6 628 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 CNMDO75829 334 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 CDK2AP2O75956 126 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 SEC24AO95486 1093 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 VTNP04004 478 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 PRMT2P55345 433 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 SPP2Q13103 211 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 HERC3Q15034 1050 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 MOGAT2Q3SYC2 334 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 OTUD6AQ7L8S5 288 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 MAATS1Q7Z4T9 603 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 NUDT13Q86X67 352 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 HSCBQ8IWL3 235 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 NDUFAF2Q8N183 169 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 CCDC89Q8N998 374 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 TEX19Q8NA77 164 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 Q8NBF4 154 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 EXD1Q8NHP7 514 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 RAET1EQ8TD07 263 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 FRAT1Q92837 279 aaPredicted RBP4.15□□□□□ -1.75
PRPF39-209ENST00000556353 DHX58Q96C10 678 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 ZNF486Q96H40 463 aaPredicted RBP4.15□□□□□ -1.75
PRPF39-209ENST00000556353 NECTIN4Q96NY8 510 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 DEFB118Q96PH6 123 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 CDRT15Q96T59 188 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 FAM49AQ9H0Q0 323 aaPredicted RBP4.15□□□□□ -1.75
PRPF39-209ENST00000556353 PORCNQ9H237 461 aa4.15□□□□□ -1.75
PRPF39-209ENST00000556353 GKN1Q9NS71 199 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms