RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 BET1O15155 118 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 RGS14O43566 566 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 SEC22BO75396 215 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 MTX2O75431 263 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 STK16O75716 305 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 UGT2B17O75795 530 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 RPLP0P05388 317 aaKnown RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 RETP07949 1114 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 EPB42P16452 691 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 IL1RNP18510 177 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 GADD45AP24522 165 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 NSG1P42857 185 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 UGT2B15P54855 530 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PRMT2P55345 433 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 WDR5P61964 334 aaKnown RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 BNC1Q01954 994 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 MAD2L1BPQ15013 274 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 CPSF6Q16630 551 aaKnown RBP eCLIP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 LILRA6Q6PI73 481 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 SERPINA13PQ6UXR4 307 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 MAMSTRQ6ZN01 415 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 KCTD20Q7Z5Y7 419 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 CYP4Z1Q86W10 505 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 CADM2Q8N3J6 435 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 OR10A6Q8NH74 314 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 RIPOR3Q96MK2 946 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 TOX2Q96NM4 488 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PHOX2BQ99453 314 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 GABARAPL1Q9H0R8 117 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ZBP1Q9H171 429 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 LRTM1Q9HBL6 345 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PLSCR3Q9NRY6 295 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 TRPS1Q9UHF7 1281 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 HS3ST2Q9Y278 367 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 DLGAP4Q9Y2H0 992 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 AP3M1Q9Y2T2 418 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PPIL1Q9Y3C6 166 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PCDHGB2Q9Y5G2 931 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 IGLV3-16A0A075B6K0 115 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 TRAV19A0A0A6YYK7 116 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 PDYNP01213 254 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 LINC00271P0C7V0 271 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 EBLN1P0CF75 366 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 BCKDHAP12694 445 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 CYP4B1P13584 511 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 CSF2RAP15509 400 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 ITGA2P17301 1181 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 CYP2A7P20853 494 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 SOX6P35712 828 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 GNPDA1P46926 289 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 RPIAP49247 311 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 SNRPD1P62314 119 aaKnown RBP11.8□□□□□ -0.52
SHMT2-207ENST00000553837 IL1RL1Q01638 556 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 PON2Q15165 354 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 SMN1Q16637 294 aaKnown RBP11.8□□□□□ -0.52
SHMT2-207ENST00000553837 LRRC26Q2I0M4 334 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 PROX2Q3B8N5 592 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 USP39Q53GS9 565 aaKnown RBP11.8□□□□□ -0.52
SHMT2-207ENST00000553837 FLCNQ8NFG4 579 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 TCEAL4Q96EI5 215 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 ASIC4Q96FT7 647 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 MAP6Q96JE9 813 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 RNF170Q96K19 258 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 COPS8Q99627 209 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 RHNO1Q9BSD3 238 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 CLMPQ9H6B4 373 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 BRD9Q9H8M2 597 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 TMEM39AQ9NV64 488 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 KCTD5Q9NXV2 234 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 B4GALT6Q9UBX8 382 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 NDRG4Q9ULP0 352 aaKnown RBP11.8□□□□□ -0.52
SHMT2-207ENST00000553837 TRAPPC4Q9Y296 219 aa11.8□□□□□ -0.52
SHMT2-207ENST00000553837 PRRC2BQ5JSZ5 2229 aaKnown RBP11.8□□□□□ -0.52
SHMT2-207ENST00000553837 KCNE1BA0A087WTH5 132 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ERVH48-1M5A8F1 160 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SLC28A1O00337 649 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CCL16O15467 120 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SSX4O60224 188 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 FGF18O76093 207 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 RECQL5O94762 991 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 C1QCP02747 245 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 C8AP07357 584 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ACRP10323 421 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TACR1P25103 407 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 AOAHP28039 575 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TIE1P35590 1138 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 HNF4AP41235 474 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 OR3A3P47888 321 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SRP54P61011 504 aaKnown RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CYP4F3Q08477 520 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ELP6Q0PNE2 266 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TIGD6Q17RP2 521 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SYCE2Q6PIF2 218 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 RNF165Q6ZSG1 346 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 Q6ZVU0 165 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 AHSA2Q719I0 299 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 NRARPQ7Z6K4 114 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 GPR149Q86SP6 731 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CCDC190Q86UF4 302 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms