RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZNF282Q9UDV7 671 aaPredicted RBP25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 VPS4AQ9UN37 437 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 XIRP2A4UGR9 3374 aa25.21■■□□□ 1.63
CCDC88C-205ENST00000553403 EIF4E1BA6NMX2 242 aaKnown RBP25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 H0Y8X5 98 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 SOCS2O14508 198 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 GBAP04062 536 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 CLCN2P51788 898 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 TPRG1LQ5T0D9 272 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 ZNF551Q7Z340 670 aaPredicted RBP25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 PGBD3Q8N328 593 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 MFSD2AQ8NA29 543 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 NCLNQ969V3 563 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 MAGIXQ9H6Y5 334 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 TBC1D29Q9UFV1 150 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 NDRG2Q9UN36 371 aaKnown RBP25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 V9GYQ6 96 aa25.2■■□□□ 1.63
CCDC88C-205ENST00000553403 TRBC2A0A5B9 178 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 FEZF1A0PJY2 475 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 C1orf226A1L170 272 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 A6NHS1 94 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 PLPP1O14494 284 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 CCNDBP1O95273 360 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 CD72P21854 359 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 TPP2P29144 1249 aaPredicted RBP25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 CCR5P51681 352 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 DGKEP52429 567 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 SLC14A1Q13336 389 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 LEXMQ3ZCV2 418 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 UGT2A3Q6UWM9 527 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 TPT1P8Q9HAU6 139 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 TMEM184CQ9NVA4 438 aa25.2■■□□□ 1.62
CCDC88C-205ENST00000553403 SCAMP1O15126 338 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 CLOCKO15516 846 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 OR1F1O43749 312 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 GPR37L1O60883 481 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 DEAF1O75398 565 aaPredicted RBP25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 CLEC3AO75596 197 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 SMNDC1O75940 238 aaKnown RBP eCLIP25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 GSTM2P28161 218 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 BSGP35613 385 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 GSTM5P46439 218 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 CHN2P52757 468 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 CYP4F2P78329 520 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 CCNYL2Q5T2Q4 361 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 C6orf52Q5T4I8 152 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 EID3Q8N140 333 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 OR4A15Q8NGL6 344 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 FBXO30Q8TB52 745 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 NETO1Q8TDF5 533 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 TSACCQ96A04 125 aaPredicted RBP25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 NECAB3Q96P71 396 aaPredicted RBP25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 F2RL3Q96RI0 385 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 ZNF717Q9BY31 904 aaPredicted RBP25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 MRPS30Q9NP92 439 aaKnown RBP25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 AASDHPPTQ9NRN7 309 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 DLGAP2Q9P1A6 1054 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 SPASTQ9UBP0 616 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 ADAM29Q9UKF5 820 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 AK5Q9Y6K8 562 aa25.19■■□□□ 1.62
CCDC88C-205ENST00000553403 IGKV1-8A0A0C4DH67 115 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 ARHGAP10A1A4S6 786 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 ACOX3O15254 700 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 CAPN5O15484 640 aaPredicted RBP25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 PRSS23O95084 383 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 KCNK5O95279 499 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 RASAL1O95294 804 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 TDGQ13569 410 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 VMACQ2NL98 169 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 PUS10Q3MIT2 529 aaKnown RBP25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 TMEM31Q5JXX7 168 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 ENPP6Q6UWR7 440 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 ZZZ3Q8IYH5 903 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 CBR4Q8N4T8 237 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 TMEM145Q8NBT3 493 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 ZFP90Q8TF47 636 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 SLC47A1Q96FL8 570 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 ZNF639Q9UID6 485 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 OAZ3Q9UMX2 235 aa25.18■■□□□ 1.62
CCDC88C-205ENST00000553403 TBX19O60806 448 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 ABCB1P08183 1280 aaPredicted RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 IL3P08700 152 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 SHMT2P34897 504 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 SRP54P61011 504 aaKnown RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 MC1RQ01726 317 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 ZCCHC8Q6NZY4 707 aaKnown RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 RGMAQ96B86 450 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 TRNAU1APQ9NX07 287 aaKnown RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 PDP2Q9P2J9 529 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 PCDHGB4Q9UN71 923 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 BRWD1Q9NSI6 2320 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 NDUFS4O43181 175 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 DDX5P17844 614 aaKnown RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 AK4P27144 223 aaPredicted RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 GRK3P35626 688 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 KIAA0895LQ68EN5 471 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 RD3Q7Z3Z2 195 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 ADCK2Q7Z695 626 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 ABI3BPQ7Z7G0 1075 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 NATD1Q8N6N6 113 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 135.2 ms