RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GBP7	Q8N8V2	638 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	SRFBP1	Q8NEF9	429 aa	Known RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	TWIST2	Q8WVJ9	160 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	COL26A1	Q96A83	441 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	NXPE2	Q96DL1	559 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC46A1	Q96NT5	459 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	YIPF2	Q9BWQ6	316 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	MS4A8	Q9BY19	250 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	KLHL31	Q9H511	634 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	COPS7B	Q9H9Q2	264 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	ANKH	Q9HCJ1	492 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	AHSP	Q9NZD4	102 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	DHCR7	Q9UBM7	475 aa	Known RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	CDC14A	Q9UNH5	594 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	TSC22D4	Q9Y3Q8	395 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	NEUROG3	Q9Y4Z2	214 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	PCDHB3	Q9Y5E6	796 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	PCDHGA3	Q9Y5H0	932 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	ANKRD12	Q6UB98	2062 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545		A0A088AWK7	358 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545		A0A0A6YYC8	382 aa	Predicted RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545		A0A0G2JN53	185 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	C9orf172	C9J069	976 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545		I3L1I5	382 aa	Predicted RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC28A1	O00337	649 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	PIP5K1B	O14986	540 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	NVL	O15381	856 aa	Known RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	RGS14	O43566	566 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	BRINP1	O60477	761 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	ADRB1	P08588	477 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	CCNYL3	P0C7X3	344 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	HSD3B1	P14060	373 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF28	P17035	718 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	ALOX12	P18054	663 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	IL1RN	P18510	177 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF10	P21506	573 aa	Predicted RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	AGXT	P21549	392 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	HSD3B2	P26439	372 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC5A2	P31639	672 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SKP1	P63208	163 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	HMGCS1	Q01581	520 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	OCRL	Q01968	901 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF33B	Q06732	778 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	HERC3	Q15034	1050 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	AP5B1	Q2VPB7	878 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	DEFB134	Q4QY38	66 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	TMEM214	Q6NUQ4	689 aa	Known RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	C6orf15	Q6UXA7	325 aa	Predicted RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	GALNT6	Q8NCL4	622 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	UTP15	Q8TED0	518 aa	Known RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	MR1	Q95460	341 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	GAL3ST3	Q96A11	431 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	RGMA	Q96B86	450 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	MS4A6E	Q96DS6	147 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	MMAB	Q96EY8	250 aa	Predicted RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	PPP1R36	Q96LQ0	422 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	C7orf26	Q96N11	449 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	C17orf62	Q9BQA9	187 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC6A16	Q9GZN6	736 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	BRF2	Q9HAW0	419 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLCO1B3	Q9NPD5	702 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	THSD1	Q9NS62	852 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	FOXJ2	Q9P0K8	574 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	VPS29	Q9UBQ0	182 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	MRPS2	Q9Y399	296 aa	Known RBP	9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	MSRB2	Q9Y3D2	182 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	DNAJC15	Q9Y5T4	150 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC22A7	Q9Y694	548 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	MAU2	Q9Y6X3	613 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	SPTBN2	O15020	2390 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545	CFAP54	Q96N23	3096 aa		9.66	□□□□□ -0.86
CPSF7-221	ENST00000543545		A0A1B0GX78	115 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	ARHGAP10	A1A4S6	786 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF860	A6NHJ4	632 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLCO1B7	G3V0H7	640 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545		H3BMH7	237 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	SGK494	L7N484	410 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	MEN1	O00255	615 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	RTCA	O00442	366 aa	Known RBP	9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	DSCR3	O14972	297 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	MYO1D	O94832	1006 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	KLHL18	O94889	574 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	ETHE1	O95571	254 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	B3GALT4	O96024	378 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	PIM1	P11309	404 aa	Predicted RBP	9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	HNRNPH1	P31943	449 aa	Known RBP	9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	SSR2	P43308	183 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	OR1D4	P47884	311 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	EMP3	P54852	163 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	DCD	P81605	110 aa	Known RBP	9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	ABHD18	Q0P651	414 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	HYAL2	Q12891	473 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	CSTF3	Q12996	717 aa	Known RBP	9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	CAMK2B	Q13554	666 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	CUL3	Q13618	768 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	FAM53B	Q14153	422 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC9A5	Q14940	896 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	RTP5	Q14D33	572 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	NR6A1	Q15406	480 aa		9.65	□□□□□ -0.86
CPSF7-221	ENST00000543545	UGT3A2	Q3SY77	523 aa		9.65	□□□□□ -0.86

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