RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZRSR2Q15696 482 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ADPRMQ3LIE5 342 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 TTMPQ5BVD1 217 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 RNF165Q6ZSG1 346 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 TTLL10Q6ZVT0 673 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 PLD3Q8IV08 490 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 DSELQ8IZU8 1212 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ANKRD53Q8N9V6 530 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ZNF740Q8NDX6 193 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 AGAP11Q8TF27 550 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ZNF473Q8WTR7 871 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 CCT6BQ92526 530 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 METTL2AQ96IZ6 378 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 NSUN5Q96P11 429 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 NXT1Q9UKK6 140 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ZNF490Q9ULM2 529 aaPredicted RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 RUVBL1Q9Y265 456 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 PADI2Q9Y2J8 665 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 RNF11Q9Y3C5 154 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 KIF26BQ2KJY2 2108 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 SYNDIG1LA6NDD5 238 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 KLF11O14901 512 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 SEMA3DO95025 777 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 RAB40ALP0C0E4 278 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 ALOX12P18054 663 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 NR1D1P20393 614 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 ITGAXP20702 1163 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 CSTF3Q12996 717 aaKnown RBP16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 DTX1Q86Y01 620 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 CLYBLQ8N0X4 340 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 IL22RA1Q8N6P7 574 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 OR2L5Q8NG80 312 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 WDR20Q8TBZ3 569 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 ADAMTS18Q8TE60 1221 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 CREB3L4Q8TEY5 395 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 DYDC1Q8WWB3 177 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 FKBP10Q96AY3 582 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 QRFPRQ96P65 431 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 KCNC2Q96PR1 638 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 TBCDQ9BTW9 1192 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 NPLQ9BXD5 320 aaPredicted RBP16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 REXO4Q9GZR2 422 aaKnown RBP16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 ILKAPQ9H0C8 392 aaPredicted RBP16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 C12orf65Q9H3J6 166 aaKnown RBP16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 ZNF304Q9HCX3 659 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 LHX9Q9NQ69 397 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 NDOR1Q9UHB4 597 aa16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 GPN3Q9UHW5 284 aaPredicted RBP16.67■□□□□ 0.26
CLSTN3-210ENST00000540931 GCN1Q92616 2671 aaKnown RBP16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 LRIT2A6NDA9 550 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 AGRPO00253 132 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 PCDH17O14917 1159 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 RAD1O60671 282 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 OR4F21O95013 312 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 HSPA4LO95757 839 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 RECKO95980 971 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 NTRK1P04629 796 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 CYC1P08574 325 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 CD22P20273 847 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 RORAP35398 523 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 HK2P52789 917 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 RPS15P62841 145 aaKnown RBP16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 STX3Q13277 289 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 MPP2Q14168 576 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 CHI3L2Q15782 390 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 DEPDC1Q5TB30 811 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 ZNF517Q6ZMY9 492 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 LRRC69Q6ZNQ3 347 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 PAGE2Q7Z2X7 111 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 MARCH9Q86YJ5 346 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 CACNA2D3Q8IZS8 1091 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 OR6Y1Q8NGX8 325 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 HUS1BQ8NHY5 278 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 KCNE4Q8WWG9 221 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 SELENOMQ8WWX9 145 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 RGMAQ96B86 450 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 NACC2Q96BF6 587 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 VPS50Q96JG6 964 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 GBP5Q96PP8 586 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 MECRQ9BV79 373 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 MS4A8Q9BY19 250 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 SPNS1Q9H2V7 528 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 COPS7BQ9H9Q2 264 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 INTS9Q9NV88 658 aaKnown RBP16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 THAP1Q9NVV9 213 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 FOXJ2Q9P0K8 574 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 MDC1Q14676 2089 aaKnown RBP16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 LOC400499M0QZD8 3231 aa16.66■□□□□ 0.26
CLSTN3-210ENST00000540931 CELSR3Q9NYQ7 3312 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 SMG1Q96Q15 3661 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 BLACEA4D250 179 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 SLCO1B7G3V0H7 640 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 AZIN1O14977 448 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 HCRTR1O43613 425 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 PRAMEF4O60810 478 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 CAPN1P07384 714 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 PCSK2P16519 638 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 RAP1GDS1P52306 607 aa16.65■□□□□ 0.26
CLSTN3-210ENST00000540931 UCNP55089 124 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms