RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 A0A1W2PPV9 198 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 TMEM229AB2RXF0 380 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 K7EQS6 105 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 ZIK1Q3SY52 487 aaPredicted RBP13.21□□□□□ -0.3
RTN3-210ENST00000540798 TTC23Q5W5X9 447 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 NUDT18Q6ZVK8 323 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 NMD3Q96D46 503 aaKnown RBP13.21□□□□□ -0.3
RTN3-210ENST00000540798 ZNF717Q9BY31 904 aaPredicted RBP13.21□□□□□ -0.3
RTN3-210ENST00000540798 ASPSCR1Q9BZE9 553 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 NT5DC2Q9H857 520 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 ATAD3AQ9NVI7 634 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 ABCG2Q9UNQ0 655 aa13.21□□□□□ -0.3
RTN3-210ENST00000540798 GNGT2O14610 69 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 GPR37L1O60883 481 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 SEC24DO94855 1032 aaPredicted RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 LAMP2P13473 410 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 GDI1P31150 447 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 HLCSP50747 726 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 TSTA3Q13630 321 aaPredicted RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 PRSS53Q2L4Q9 553 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 ANKRD34AQ69YU3 496 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 SPESP1Q6UW49 350 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 KRT78Q8N1N4 520 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 HDDC3Q8N4P3 179 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 OR4K1Q8NGD4 311 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 OR4A15Q8NGL6 344 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 PNPT1Q8TCS8 783 aaKnown RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 C1QTNF2Q9BXJ5 285 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 ACSL5Q9ULC5 683 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 GCM2O75603 506 aaPredicted RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 SEMA3DO95025 777 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 PCDH8O95206 1070 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 FUCA1P04066 466 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 EFNA1P20827 205 aaPredicted RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 WASP42768 502 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 CDK9P50750 372 aaKnown RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 HBA1P69905 142 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 SPIDRQ14159 915 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 PLCL1Q15111 1095 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 SLC9B2Q86UD5 537 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 OR10Q1Q8NGQ4 319 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 NPLQ9BXD5 320 aaPredicted RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 PITHD1Q9GZP4 211 aaPredicted RBP13.2□□□□□ -0.3
RTN3-210ENST00000540798 PCBD2Q9H0N5 130 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 WDR26Q9H7D7 661 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 VCX3AQ9NNX9 186 aa13.2□□□□□ -0.3
RTN3-210ENST00000540798 SLC16A6O15403 523 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 NOBOXO60393 691 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 TNFRSF21O75509 655 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ZNF682O95780 498 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 NUDT7P0C024 238 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 PIGAP37287 484 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 REEP5Q00765 189 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 CTBSQ01459 385 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 TMEM259Q4ZIN3 620 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 PPP2R2DQ66LE6 453 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 OR2T5Q6IEZ7 315 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 DCP2Q8IU60 420 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 OR2T29Q8NH02 315 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 FBLIM1Q8WUP2 373 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 SNX19Q92543 992 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 S1PR5Q9H228 398 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 TRIT1Q9H3H1 467 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 DDX18Q9NVP1 670 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 SH3BP4Q9P0V3 963 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ICKQ9UPZ9 632 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 PLXND1Q9Y4D7 1925 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 A0A1W2PP55 124 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 SAP18O00422 153 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 TBX19O60806 448 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ITGAMP11215 1152 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 SERPINB1P30740 379 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 SLC5A2P31639 672 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 GALK1P51570 392 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 MC1RQ01726 317 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 RFX4Q33E94 735 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ZBED5Q49AG3 693 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ZNF776Q68DI1 518 aaPredicted RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 THAP5Q7Z6K1 395 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 C17orf64Q86WR6 236 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ANKRD53Q8N9V6 530 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 NRBF2Q96F24 287 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 HSH2DQ96JZ2 352 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 C7orf34Q96L11 122 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 NRTNQ99748 197 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 TIMM29Q9BSF4 260 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 RPP25Q9BUL9 199 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 TDRKHQ9Y2W6 561 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 OR1A2Q9Y585 309 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 PLRG1O43660 514 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 GBAP04062 536 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 FABP3P05413 133 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 TAS2R50P59544 299 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 VLDLRP98155 873 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 C2orf80Q0P641 193 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 KCNAB2Q13303 367 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 RBM48Q5RL73 367 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.19□□□□□ -0.3
RTN3-210ENST00000540798 NAGSQ8N159 534 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 OR52N2Q8NGI0 321 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms