RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ATP6AP2O75787 350 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 CDC123O75794 336 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 CST1P01037 141 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 ANXA3P12429 323 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PRKAR2AP13861 404 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PAICSP22234 425 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 ATP5A1P25705 553 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 NNMTP40261 264 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 MAN2A2P49641 1150 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 CLK2P49760 499 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 MAZP56270 477 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SNRPEP62304 92 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 CHRNB3Q05901 458 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 COTL1Q14019 142 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PIGHQ14442 188 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 MAD2L1BPQ15013 274 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 FAM98BQ52LJ0 330 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 NOTUMQ6P988 496 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 DPPA2Q7Z7J5 298 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SERINC5Q86VE9 423 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SNX33Q8WV41 574 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SLC38A2Q96QD8 506 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 RBBP8Q99708 897 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 ZPBPQ9BS86 351 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SOX7Q9BT81 388 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SARGQ9BW04 601 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 AMNQ9BXJ7 453 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 MED28Q9H204 178 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 NDRG2Q9UN36 371 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PCDHA1Q9Y5I3 950 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 DMRT1Q9Y5R6 373 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 GLYATL1P3A0A0U1RQE8 302 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 TCRBV5S1A1TA0A578 114 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 LCHNA4D1U4 455 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 hCG_1984214I3L0E3 225 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PEX10O60683 326 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 METTL18O95568 372 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 TSPAN19P0C672 248 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ZDHHC11BP0C7U3 371 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PVALBP20472 110 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 DDX6P26196 483 aaKnown RBP eCLIP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 SDC4P31431 198 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 GPR143P51810 404 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 BCAR1P56945 870 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ZNF33AQ06730 810 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FOXM1Q08050 763 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 KCNAB1Q14722 419 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 KLHL22Q53GT1 634 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PYDC2Q56P42 97 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 NADSYN1Q6IA69 706 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 MZT2BQ6NZ67 158 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 DNAJC24Q6P3W2 148 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 TMEM107Q6UX40 140 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 OTOP2Q7RTS6 562 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ABRAQ8N0Z2 381 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PRR18Q8N4B5 295 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 WDSUB1Q8N9V3 476 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FBXL13Q8NEE6 735 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ACVR1CQ8NER5 493 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 RDM1Q8NG50 284 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ZNF675Q8TD23 568 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 LRRN4Q8WUT4 740 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 HGDQ93099 445 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 UBE2FQ969M7 185 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 RTP4Q96DX8 246 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 TMEM41AQ96HV5 264 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FAM84AQ96KN4 292 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PPP3R2Q96LZ3 170 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PARK7Q99497 189 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 P2RX7Q99572 595 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 RASSF1Q9NS23 344 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 TREM2Q9NZC2 230 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ADAM28Q9UKQ2 775 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ADAMTS5Q9UNA0 930 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PKP3Q9Y446 797 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CMAHPQ9Y471 501 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CHD5Q8TDI0 1954 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PRAMEF33A0A0G2JMD5 474 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FABP12A6NFH5 140 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 MANSC4A6NHS7 340 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 K7ENM7 598 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FPGTO14772 594 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PRAMEF10O60809 474 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 WBP4O75554 376 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 TAL1P17542 331 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 RHCEP18577 417 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 UBA1P22314 1058 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 YWHABP31946 246 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 RPS19P39019 145 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 DCTP40126 519 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PBX3P40426 434 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ATP4BP51164 291 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PGGT1BP53609 377 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 LIMK2P53671 638 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 GRM1Q13255 1194 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 NKG7Q16617 165 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 MAJINQ3KP22 176 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CYHR1Q6ZMK1 362 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 PROSER1Q86XN7 944 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CENPLQ8N0S6 344 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms