RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GIPC3Q8TF64 312 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 EXOSC8Q96B26 276 aaKnown RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 CHFRQ96EP1 664 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 SAMD4AQ9UPU9 718 aaKnown RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 MAN2B2Q9Y2E5 1009 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 PCDHB11Q9Y5F2 797 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 SUV39H1O43463 412 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 PCDHGA12O60330 932 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 CA3P07451 260 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 CISD3P0C7P0 127 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 RNF144AP50876 292 aaPredicted RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 CRISP3P54108 245 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 PRKAG1P54619 331 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 MAPK11Q15759 364 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 LEXMQ3ZCV2 418 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 C9orf64Q5T6V5 341 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 LIPJQ5W064 366 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 CAPN13Q6MZZ7 669 aaPredicted RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 METTL3Q86U44 580 aaKnown RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 HEATR4Q86WZ0 1026 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 TCAIMQ8N3R3 496 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 VANGL1Q8TAA9 524 aaPredicted RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 GANCQ8TET4 914 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 NIPSNAP1Q9BPW8 284 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 KCNK6Q9Y257 313 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 HELZP42694 1942 aaKnown RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 CHRM5P08912 532 aaPredicted RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 HSMCR30P0CW71 290 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 DCKP27707 260 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 IL12RB1P42701 662 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 ARHGDIAP52565 204 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 SPIBQ01892 262 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 MADCAM1Q13477 382 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 ZNF691Q5VV52 312 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 DPPA4Q7L190 304 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 SLC5A8Q8N695 610 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 ZNF707Q96C28 371 aaPredicted RBP16.22■□□□□ 0.19
USP28-208ENST00000540438 DTD2Q96FN9 168 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 WFDC6Q9BQY6 131 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 RERGLQ9H628 205 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 RAD18Q9NS91 495 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 DEC1Q9P2X7 70 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 DYRK1BQ9Y463 629 aa16.22■□□□□ 0.19
USP28-208ENST00000540438 BOLA2-SMG1P6H3BVE0 249 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 ADRB3P13945 408 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 TIA1P31483 386 aaKnown RBP eCLIP16.21■□□□□ 0.19
USP28-208ENST00000540438 NUP107P57740 925 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 SRSF11Q05519 484 aaKnown RBP16.21■□□□□ 0.19
USP28-208ENST00000540438 ZNF750Q32MQ0 723 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 IRAK1BP1Q5VVH5 260 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 GRHL2Q6ISB3 625 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 TSEN54Q7Z6J9 526 aaKnown RBP16.21■□□□□ 0.19
USP28-208ENST00000540438 CLIP4Q8N3C7 705 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 ASPSCR1Q9BZE9 553 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 MIR1-1HGQ9H1L0 117 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 IL23AQ9NPF7 189 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 POLE4Q9NR33 117 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 A0A1W2PS29 197 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 LINC01553A4QN01 128 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 OR52A4PA6NMU1 304 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 PCDH17O14917 1159 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 PHEXP78562 749 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 RBM45Q8IUH3 476 aaKnown RBP16.21■□□□□ 0.19
USP28-208ENST00000540438 FAM81AQ8TBF8 368 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 ARSGQ96EG1 525 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 PHOX2BQ99453 314 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 PRR14Q9BWN1 585 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 SLC6A16Q9GZN6 736 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 MIEF1Q9NQG6 463 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 DYRK4Q9NR20 520 aa16.21■□□□□ 0.19
USP28-208ENST00000540438 MBNL1Q9NR56 388 aaKnown RBP16.21■□□□□ 0.19
USP28-208ENST00000540438 ANKDD1BA6NHY2 528 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 NARSO43776 548 aaKnown RBP16.21■□□□□ 0.18
USP28-208ENST00000540438 SOX14O95416 240 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 ACP5P13686 325 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 GPX2P18283 190 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 EN2P19622 333 aaPredicted RBP16.21■□□□□ 0.18
USP28-208ENST00000540438 KRT20P35900 424 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 PRMT2P55345 433 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 LSM11P83369 360 aaKnown RBP eCLIP16.21■□□□□ 0.186e-18■■■■■ 77.1
USP28-208ENST00000540438 GGTA1PQ4G0N0 100 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 WDR53Q7Z5U6 358 aaPredicted RBP16.21■□□□□ 0.18
USP28-208ENST00000540438 BCDIN3DQ7Z5W3 292 aaKnown RBP16.21■□□□□ 0.18
USP28-208ENST00000540438 SHISA5Q8N114 240 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 ZFP90Q8TF47 636 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 PPCDCQ96CD2 204 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 RPP25Q9BUL9 199 aaKnown RBP16.21■□□□□ 0.18
USP28-208ENST00000540438 RAD21L1Q9H4I0 556 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 TBC1D14Q9P2M4 693 aa16.21■□□□□ 0.18
USP28-208ENST00000540438 ZNF197O14709 1029 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 CD6P30203 668 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 CLCNKAP51800 687 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 KCNJ10P78508 379 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 SKIV2LQ15477 1246 aaKnown RBP16.2■□□□□ 0.18
USP28-208ENST00000540438 CARTPTQ16568 116 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 PRSS36Q5K4E3 855 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 FAM124AQ86V42 546 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 HIPK1Q86Z02 1210 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 C7orf61Q8IZ16 206 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 AADATQ8N5Z0 425 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms