RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CHIT1Q13231 466 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 PAGE2BQ5JRK9 111 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 SHISA6Q6ZSJ9 500 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 MED25Q71SY5 747 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 ABHD13Q7L211 337 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 PDSS2Q86YH6 399 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 ZC3H7AQ8IWR0 971 aaKnown RBP14.25□□□□□ -0.13
CPSF1-208ENST00000532560 CRB3Q9BUF7 120 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 TRIM55Q9BYV6 548 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 ING2Q9H160 280 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 TBK1Q9UHD2 729 aa14.25□□□□□ -0.13
CPSF1-208ENST00000532560 SGK494L7N484 410 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 AGPSO00116 658 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 PEX12O00623 359 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 SOCS6O14544 535 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 GALR3O60755 368 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 SMIM24O75264 130 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 RDH16O75452 317 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 CLEC3AO75596 197 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 C1QL1O75973 258 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 GSTA1P08263 222 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 CYC1P08574 325 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 NUDT17P0C025 328 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 ZNF888P0CJ79 500 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 STXBP1P61764 594 aaKnown RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 MAT1AQ00266 395 aaKnown RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 SYT16Q17RD7 645 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 VWA2Q5GFL6 755 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 TMEM151AQ8N4L1 468 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 TEX9Q8N6V9 391 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 PTGR2Q8N8N7 351 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 C9orf43Q8TAL5 461 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 UTP15Q8TED0 518 aaKnown RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 UBE2E3Q969T4 207 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 GAL3ST3Q96A11 431 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 SH3GL2Q99962 352 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 SLC25A18Q9H1K4 315 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 RHBGQ9H310 441 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 ACSS2Q9NR19 701 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 P4HTMQ9NXG6 502 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 C3orf18Q9UK00 162 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 NAALAD2Q9Y3Q0 740 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 ANGPTL3Q9Y5C1 460 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 HS3ST3B1Q9Y662 390 aa14.24□□□□□ -0.13
CPSF1-208ENST00000532560 FASNP49327 2511 aaKnown RBP14.24□□□□□ -0.13
CPSF1-208ENST00000532560 ANKDD1BA6NHY2 528 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 LRRC14BA6NHZ5 514 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 IDSB3KWA1 339 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 MKRN2OSH3BPM6 223 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 E2F3O00716 465 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 FFAR3O14843 346 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 PCDH17O14917 1159 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 GPR42O15529 346 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 UGDHO60701 494 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 CDH16O75309 829 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 CEACAM4O75871 244 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 DNAJB5O75953 348 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 SIX3O95343 332 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 BMP10O95393 424 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 PRB1P04280 392 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 SBK3P0C264 359 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 SMIM10L1P0DMW3 83 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 EEF1DP29692 281 aaKnown RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 SERPINB1P30740 379 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 HPDP32754 393 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 SLCO1A2P46721 670 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 CHAF1BQ13112 559 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 GTF2H2Q13888 395 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 RBBP7Q16576 425 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 HIST2H2ACQ16777 129 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 ADPRMQ3LIE5 342 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 DEFB134Q4QY38 66 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 TOR1AIP1Q5JTV8 583 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 DCAF10Q5QP82 559 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 HIST2H2AA3Q6FI13 130 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 GRHL2Q6ISB3 625 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 GTF2H2CQ6P1K8 395 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 GOLGA7Q7Z5G4 137 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 VN1R5Q7Z5H4 357 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 LAS2Q8IYD9 372 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 PRSS58Q8IYP2 241 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 OR51Q1Q8NH59 317 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 EPS8L3Q8TE67 593 aaKnown RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 SMIM10Q96HG1 83 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 VPS50Q96JG6 964 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 FER1L6-AS2Q96M78 137 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 OR1F2PQ96R84 312 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 YIPF2Q9BWQ6 316 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 AICDAQ9GZX7 198 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 CLK4Q9HAZ1 481 aaKnown RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 HCN3Q9P1Z3 774 aa14.23□□□□□ -0.13
CPSF1-208ENST00000532560 ZNF490Q9ULM2 529 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 PCDHGA9Q9Y5G4 932 aaKnown RBP14.23□□□□□ -0.13
CPSF1-208ENST00000532560 A0A1W2PQ72 361 aa14.22□□□□□ -0.13
CPSF1-208ENST00000532560 LRIT2A6NDA9 550 aa14.22□□□□□ -0.13
CPSF1-208ENST00000532560 ZNF860A6NHJ4 632 aa14.22□□□□□ -0.13
CPSF1-208ENST00000532560 C4orf51C9J302 202 aa14.22□□□□□ -0.13
CPSF1-208ENST00000532560 TBX6O95947 436 aaPredicted RBP14.22□□□□□ -0.13
CPSF1-208ENST00000532560 RPS17P08708 135 aaKnown RBP14.22□□□□□ -0.13
CPSF1-208ENST00000532560 PYGBP11216 843 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms