RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TRPT1Q86TN4 253 aaKnown RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 THEM5Q8N1Q8 247 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 KDM8Q8N371 416 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 RFLNBQ8N5W9 214 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 TMEM99Q8N816 258 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 GBP7Q8N8V2 638 aaPredicted RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 MAB21L3Q8N8X9 362 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 Q8N9P0 234 aaPredicted RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 CCNYQ8ND76 341 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 DMBX1Q8NFW5 382 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 APOBEC4Q8WW27 367 aaKnown RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 HPSE2Q8WWQ2 592 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 METTL21AQ8WXB1 218 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 HAS2Q92819 552 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 CFAP36Q96G28 342 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 MARK4Q96L34 752 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 SAMD8Q96LT4 415 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 C10orf90Q96M02 699 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 TSGA13Q96PP4 275 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 NEDD4LQ96PU5 975 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 MEIS3Q99687 375 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 FAM213AQ9BRX8 229 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 NUSAP1Q9BXS6 441 aaKnown RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 LRRC2Q9BYS8 371 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 BICC1Q9H694 974 aaKnown RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 ECHDC1Q9NTX5 307 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.65□□□□□ -1.99
CD44-234ENST00000531873 INTS9Q9NV88 658 aaKnown RBP2.65□□□□□ -1.99
CD44-234ENST00000531873 PANK4Q9NVE7 773 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 FAM118AQ9NWS6 357 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 EPS15L1Q9UBC2 864 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 TSPAN16Q9UKR8 245 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 DNPEPQ9ULA0 475 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 GRID1Q9ULK0 1009 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 KCNJ14Q9UNX9 436 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 CLCA3PQ9Y6N3 262 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 COLEC10Q9Y6Z7 277 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 NPHP3Q7Z494 1330 aa2.65□□□□□ -1.99
CD44-234ENST00000531873 A0A087WUV0 522 aaPredicted RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 TRBV4-1A0A0J9YWV2 114 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 RGSL1A5PLK6 1076 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 CFAP73A6NFT4 308 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 KPNA7A9QM74 516 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 M0R296 226 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 MAGEB2O15479 319 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TEX28O15482 410 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 INSIG1O15503 277 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 BUB3O43684 328 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 LRP3O75074 770 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 SAP30O75446 220 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 CLN5O75503 358 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 PRDM1O75626 825 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TRIM16O95361 564 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 SEC24AO95486 1093 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 MT-ND2P03891 347 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 T-ENOLP0DO92 83 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 ITGA3P26006 1051 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 AKT2P31751 481 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 PITPNBP48739 271 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 NR0B1P51843 470 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 HNRNPFP52597 415 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 LBX1P52954 281 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 HUNKP57058 714 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 EVCP57679 992 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 ERVFC1-1P60608 527 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 POLR2FP61218 127 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 HERV-K104P61576 105 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 MYL7Q01449 175 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 C12orf60Q5U649 245 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 WBP2NLQ6ICG8 309 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 OR6B2Q6IFH4 312 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 C19orf48Q6RUI8 117 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 CD164L2Q6UWJ8 174 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 CEACAM20Q6UY09 585 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 WDR88Q6ZMY6 472 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 C17orf107Q6ZR85 190 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 SAMD14Q8IZD0 417 aaPredicted RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 GPC2Q8N158 579 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 FBXW8Q8N3Y1 598 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 SIDT2Q8NBJ9 832 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 TRPV3Q8NET8 790 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TM9SF4Q92544 642 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 SEPT8Q92599 483 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TAF4BQ92750 862 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TMEM143Q96AN5 459 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 ULK4Q96C45 1275 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 NXPE2Q96DL1 559 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 KCNK16Q96T55 309 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 WACQ9BTA9 647 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 SIRPDQ9H106 197 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 ABCG4Q9H172 646 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 DPEP2Q9H4A9 486 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 ATP13A3Q9H7F0 1226 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 RPF1Q9H9Y2 349 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 LIN28AQ9H9Z2 209 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 EXOC1Q9NV70 894 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TBC1D13Q9NVG8 400 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 INTS10Q9NVR2 710 aaKnown RBP2.64□□□□□ -1.99
CD44-234ENST00000531873 TMOD3Q9NYL9 352 aa2.64□□□□□ -1.99
CD44-234ENST00000531873 TAS2R3Q9NYW6 316 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms