RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PLAC1Q9HBJ0 212 aa13.37□□□□□ -0.27
CPSF1-201ENST00000526271 CCDC177Q9NQR7 707 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-201ENST00000526271 C19orf25Q9UFG5 118 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-201ENST00000526271 SLC22A7Q9Y694 548 aa13.37□□□□□ -0.27
CPSF1-201ENST00000526271 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 PINLYPA6NC86 204 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 E9PLN8 166 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 CHST10O43529 356 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 SLC25A12O75746 678 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 FGGP02679 453 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 FHP07954 510 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 CD46P15529 392 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 TRHRP34981 398 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 AP2B1P63010 937 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 CDK16Q00536 496 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 NAE1Q13564 534 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 DHX34Q14147 1143 aaKnown RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 CMPK2Q5EBM0 449 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 RBM20Q5T481 1227 aaKnown RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 CAPN13Q6MZZ7 669 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 AGTRAPQ6RW13 159 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 MEX3BQ6ZN04 569 aaKnown RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 RPS19BP1Q86WX3 136 aaKnown RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 CEP97Q8IW35 865 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 LGI4Q8N135 537 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 GHDCQ8N2G8 530 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 ABHD11Q8NFV4 315 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 SLC13A3Q8WWT9 602 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 NRGNQ92686 78 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 PYCR2Q96C36 320 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 SDCCAG3Q96C92 435 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 THAP11Q96EK4 314 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 PBKQ96KB5 322 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 SIGLEC10Q96LC7 697 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 OR1F2PQ96R84 312 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 LPAR4Q99677 370 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 NAPGQ99747 312 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 VKORC1Q9BQB6 163 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 AARSD1Q9BTE6 412 aaKnown RBP13.36□□□□□ -0.27
CPSF1-201ENST00000526271 UCK2Q9BZX2 261 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 NECTIN3Q9NQS3 549 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 PLSCR2Q9NRY7 297 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 SLC17A6Q9P2U8 582 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 SNX12Q9UMY4 172 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 NCKAP5O14513 1909 aa13.36□□□□□ -0.27
CPSF1-201ENST00000526271 FLNAP21333 2647 aaKnown RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 A0A1B0GTH9 108 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 CTAGE9A4FU28 777 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 NKX2-6A6NCS4 301 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 ZNF839A8K0R7 811 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 CES2O00748 559 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 ZBTB14O43829 449 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 PRKNO60260 465 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 ENO3P13929 434 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 ITGA8P53708 1063 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 CASP6P55212 293 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 CDKN2DP55273 166 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 OR4D2P58180 307 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 OC90Q02509 493 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 MAPKAPK3Q16644 382 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 CATSPEREQ5SY80 951 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 PAQR3Q6TCH7 311 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 LCTLQ6UWM7 567 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 SYT10Q6XYQ8 523 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 C16orf47Q6ZP98 133 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 MDGA2Q7Z553 956 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 RASGEF1CQ8N431 466 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 ANKRD53Q8N9V6 530 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 TMEM178AQ8NBL3 297 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 CAMKVQ8NCB2 501 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 APCDD1LQ8NCL9 501 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 POM121Q96HA1 1249 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 SERPINB12Q96P63 405 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 OSBPL9Q96SU4 736 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 OLFM1Q99784 485 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 EBNA1BP2Q99848 306 aaKnown RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 KLHL31Q9H511 634 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 ANKHQ9HCJ1 492 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 DEPPQ9NTK1 212 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 UTP6Q9NYH9 597 aaKnown RBP13.35□□□□□ -0.27
CPSF1-201ENST00000526271 FBXO5Q9UKT4 447 aa13.35□□□□□ -0.27
CPSF1-201ENST00000526271 TMEM200CA6NKL6 621 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 GOLGA8MH3BSY2 632 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 KIF2AO00139 706 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-201ENST00000526271 NDC80O14777 642 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 B4GALT2O60909 372 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 TOXO94900 526 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 SMIM10L1P0DMW3 83 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 ABOP16442 354 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 ZNF24P17028 368 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 MAOAP21397 527 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 CASQ1P31415 396 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 CXCR5P32302 372 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 MEOX1P50221 254 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 GPR143P51810 404 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 DHX9Q08211 1270 aaKnown RBP13.34□□□□□ -0.27
CPSF1-201ENST00000526271 GPS1Q13098 491 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 TTLL9Q3SXZ7 439 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 DEFB134Q4QY38 66 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 UGT3A1Q6NUS8 523 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms