RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 STMND1H3BQB6 276 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 TLX3O43711 291 aaPredicted RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 CPNE3O75131 537 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 KRT6AP02538 564 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 KRT6BP04259 564 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 SERPIND1P05546 499 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 DRD4P21917 467 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 CD82P27701 267 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 HNRNPH1P31943 449 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 PIK3CBP42338 1070 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 KRT6CP48668 564 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 PCBP4P57723 403 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 RPS13P62277 151 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 IFT88Q13099 833 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 GRM7Q14831 915 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 HIST2H2ACQ16777 129 aaPredicted RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 HKDC1Q2TB90 917 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 VWA5B1Q5TIE3 1220 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 HIST2H2AA3Q6FI13 130 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 WDR75Q8IWA0 830 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 ARHGEF39Q8N4T4 335 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 TTC29Q8NA56 475 aaPredicted RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 GALNT6Q8NCL4 622 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 RFWD2Q8NHY2 731 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 SELENOMQ8WWX9 145 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 REPS1Q96D71 796 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 CLIP3Q96DZ5 547 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 THAP11Q96EK4 314 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 THOC1Q96FV9 657 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 NAF1Q96HR8 494 aaKnown RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 NDC1Q9BTX1 674 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 NUF2Q9BZD4 464 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 DKK4Q9UBT3 224 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 PPT2Q9UMR5 302 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 TMEM184BQ9Y519 407 aaPredicted RBP14.58□□□□□ -0.08
LSM1-203ENST00000520755 PCDHB3Q9Y5E6 796 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 USH1CQ9Y6N9 552 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 SCN2AQ99250 2005 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 FRYQ5TBA9 3013 aa14.58□□□□□ -0.08
LSM1-203ENST00000520755 FREM2Q5SZK8 3169 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 SDHDO14521 159 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 HDAC3O15379 428 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 NDUFS4O43181 175 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ULK1O75385 1050 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 CLEC3AO75596 197 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 MED26O95402 600 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 DLGAP3O95886 979 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 LINC00032P0C843 101 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ATXN8OSP0DMR3 200 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 GSTM2P28161 218 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 GCGRP47871 477 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 HMGCS1Q01581 520 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 CSTF3Q12996 717 aaKnown RBP14.57□□□□□ -0.08
LSM1-203ENST00000520755 PRTGQ2VWP7 1150 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ADPRMQ3LIE5 342 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 Q6ZSR9 355 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 TIPARPQ7Z3E1 657 aaKnown RBP14.57□□□□□ -0.08
LSM1-203ENST00000520755 TRIM46Q7Z4K8 759 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ASPGQ86U10 573 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 SLC38A9Q8NBW4 561 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 TTLQ8NG68 377 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 NT5CQ8TCD5 201 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ZCCHC14Q8WYQ9 949 aaKnown RBP14.57□□□□□ -0.08
LSM1-203ENST00000520755 C19orf60Q96EN9 201 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 SEC16BQ96JE7 1060 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 FAR2Q96K12 515 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 PPP1R36Q96LQ0 422 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 NLNQ9BYT8 704 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 SLC6A16Q9GZN6 736 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 MEAF6Q9HAF1 191 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 PRM3Q9NNZ6 103 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 NPHS2Q9NP85 383 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ENAMQ9NRM1 1142 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 GIMAP2Q9UG22 337 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 ACSL6Q9UKU0 697 aa14.57□□□□□ -0.08
LSM1-203ENST00000520755 RUVBL1Q9Y265 456 aaKnown RBP14.57□□□□□ -0.08
LSM1-203ENST00000520755 MRPS2Q9Y399 296 aaKnown RBP14.57□□□□□ -0.08
LSM1-203ENST00000520755 HYKKA2RU49 373 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 ANKDD1BA6NHY2 528 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 FOXE1O00358 373 aaPredicted RBP14.56□□□□□ -0.08
LSM1-203ENST00000520755 RAD1O60671 282 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 SH3BGRLO75368 114 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 TGDSO95455 350 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 TGFB1P01137 390 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 CAPNS1P04632 268 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 HBQ1P09105 142 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 LIPCP11150 499 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 SERPINB1P30740 379 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 HK2P52789 917 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 ZNF33BQ06732 778 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 TGIF1Q15583 401 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 SLC9B1Q4ZJI4 515 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 C10orf62Q5T681 223 aaPredicted RBP14.56□□□□□ -0.08
LSM1-203ENST00000520755 C1orf189Q5VU69 101 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 C6orf15Q6UXA7 325 aaPredicted RBP14.56□□□□□ -0.08
LSM1-203ENST00000520755 TTLL10Q6ZVT0 673 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 DDIASQ8IXT1 998 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 KIRREL3Q8IZU9 778 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 NLGN4XQ8N0W4 816 aa14.56□□□□□ -0.08
LSM1-203ENST00000520755 KCT2Q8NC54 265 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms