RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NECTIN3Q9NQS3 549 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 FARSBQ9NSD9 589 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 FAM118AQ9NWS6 357 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 MS4A12Q9NXJ0 267 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 NDRG2Q9UN36 371 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 SRPRAP08240 638 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 ARSAP15289 507 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 BPIP17213 487 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 RPS26P62854 115 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 TXNL4AP83876 142 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 FBXO43Q4G163 708 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 SHQ1Q6PI26 577 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 HACD2Q6Y1H2 254 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 HS3ST5Q8IZT8 346 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 GLYATL1Q969I3 302 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 CRELD1Q96HD1 420 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 AKAP7Q9P0M2 348 aaPredicted RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 UBR2Q8IWV8 1755 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 CHD4Q14839 1912 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 UNCXA6NJT0 531 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 HMGN1P05114 100 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 SLC2A2P11168 524 aaPredicted RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 CDH11P55287 796 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 PPIGQ13427 754 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP53-209ENST00000514665 PLEKHS1Q5SXH7 462 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 FAM180BQ6P0A1 224 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 PAQR9Q6ZVX9 377 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 SAMD14Q8IZD0 417 aaPredicted RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 RNASE11Q8TAA1 199 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 FRS2Q8WU20 508 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 GSDMCQ9BYG8 508 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 SLC35C2Q9NQQ7 365 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 TNFRSF10DQ9UBN6 386 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 LAMA4Q16363 1823 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 BMP2P12643 396 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 OXTRP30559 389 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 ARCN1P48444 511 aaKnown RBP12.23□□□□□ -0.45
USP53-209ENST00000514665 STARP49675 285 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 SMSP52788 366 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 DCDC1P59894 354 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CD83Q01151 205 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 ID2Q02363 134 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 HYAL2Q12891 473 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 PMS2P3Q13401 168 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TAZQ16635 292 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 ALG11Q2TAA5 492 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 IER5LQ5T953 404 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 OLFML2AQ68BL7 652 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 FBXO15Q8NCQ5 510 aaPredicted RBP12.23□□□□□ -0.45
USP53-209ENST00000514665 LGALS12Q96DT0 336 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CDADC1Q9BWV3 514 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TAS2R9Q9NYW1 312 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 BOLA2-SMG1P6H3BVE0 249 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 ZNF24P17028 368 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GRK6P43250 576 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TMBIM6P55061 237 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 MLLT10P55197 1068 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GMFBP60983 142 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 NDUFA9Q16795 377 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 PKDCCQ504Y2 493 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 KANK2Q63ZY3 851 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CNKSR3Q6P9H4 555 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TMCO2Q7Z6W1 182 aaPredicted RBP12.23□□□□□ -0.45
USP53-209ENST00000514665 CHST4Q8NCG5 386 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TMEM174Q8WUU8 243 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 POF1BQ8WVV4 589 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 MAL2Q969L2 176 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 SGIP1Q9BQI5 828 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 INSL6Q9Y581 213 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TCRBV5S1A1TA0A578 114 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 B4GAT1O43505 415 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 STSP08842 583 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GNAO1P09471 354 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GDI1P31150 447 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 SLC6A4P31645 630 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GJA5P36382 358 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CLDN8P56748 225 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 ZXDBP98169 803 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 KCNC4Q03721 635 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CD47Q08722 323 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GK3PQ14409 553 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 PRPF38BQ5VTL8 546 aaKnown RBP12.23□□□□□ -0.45
USP53-209ENST00000514665 ADNP2Q6IQ32 1131 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 DCUN1D3Q8IWE4 304 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 SLC30A8Q8IWU4 369 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CCDC116Q8IYX3 515 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 KLHL36Q8N4N3 616 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 TTLQ8NG68 377 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 FEVQ99581 238 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 C11orf84Q9BUA3 381 aaPredicted RBP12.23□□□□□ -0.45
USP53-209ENST00000514665 FUNDC2Q9BWH2 189 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 CHIAQ9BZP6 476 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 NEUROD4Q9HD90 331 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 FBXL12Q9NXK8 326 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 GJD2Q9UKL4 321 aa12.23□□□□□ -0.45
USP53-209ENST00000514665 AKAP8O43823 692 aaKnown RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 ECDO95905 644 aaPredicted RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 IL3P08700 152 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 ETFAP13804 333 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 TNFRSF1BP20333 461 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms