RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 MEN1O00255 615 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 KIAA0513O60268 411 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 LILRB5O75023 590 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 S100A8P05109 93 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 NR4A2P43354 598 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 RAP2BP61225 183 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 HTD2P86397 168 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 KCNAB2Q13303 367 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 AVPI1Q5T686 147 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 PLEKHH3Q7Z736 793 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TMEM185AQ8NFB2 350 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SNAPC3Q92966 411 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 FCRL3Q96P31 734 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 OSMRQ99650 979 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 GPSM3Q9Y4H4 160 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 EFCAB6Q5THR3 1501 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CRB1P82279 1406 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TO15178 435 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CD3GP09693 182 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CBSLP0DN79 551 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CBSP35520 551 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 DNAJB13P59910 316 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 MON1BQ7L1V2 547 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 ILDR1Q86SU0 546 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 ABHD11Q8NFV4 315 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC22A8Q8TCC7 542 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC35A5Q9BS91 424 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 ASF1BQ9NVP2 202 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 A0A0D9SG52 128 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 C2orf92A0A1B0GVN3 265 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TTLL8A6PVC2 850 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 B3GALT2O43825 422 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 BCAS1O75363 584 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 RAB3AP20336 220 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CXCR1P25024 350 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 MASP1P48740 699 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 GLUD2P49448 558 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 BACE1P56817 501 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TAF1AQ15573 450 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 RFPL4BQ6ZWI9 263 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 LNX2Q8N448 690 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 KDM1BQ8NB78 822 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 OR2AP1Q8NGE2 309 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SNX27Q96L92 541 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SAMD11Q96NU1 681 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 OR2M2Q96R28 347 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 MFFQ9GZY8 342 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 AKTIPQ9H8T0 292 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 MRPL17Q9NRX2 175 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 ZNF226Q9NYT6 803 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 EIF2B4Q9UI10 523 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 NEDD8-MDP1E9PL57 170 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 NPC1O15118 1278 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 FAM155BO75949 473 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 CDK14O94921 469 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 ADRB2P07550 413 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 HCKP08631 526 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 MYCLP1P12525 358 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 EVI2BP34910 448 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 AFF3P51826 1226 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 HSPB3Q12988 150 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 EARS2Q5JPH6 523 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC27A4Q6P1M0 643 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 TSPYL5Q86VY4 417 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 DNAAF1Q8NEP3 725 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC22A18Q96BI1 424 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 MUS81Q96NY9 551 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 ABCG8Q9H221 673 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC38A1Q9H2H9 487 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 OR51I1Q9H343 314 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 PCDHB3Q9Y5E6 796 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 NRXN1Q9ULB1 1477 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 GRM6O15303 877 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 MAGEB1P43366 347 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 FCGRTP55899 365 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 FLI1Q01543 452 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 NOL9Q5SY16 702 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 GPR157Q5UAW9 335 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 MRPL41Q8IXM3 137 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 NXPE1Q8N323 547 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SUMF2Q8NBJ7 301 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 FAM46BQ96A09 425 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 PLEKHA3Q9HB20 300 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SMPD4Q9NXE4 827 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 A0A1W2PS29 197 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 FAM159BA6NKW6 160 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC22A31A6NKX4 558 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 HHLA1C9JL84 531 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 E9PI62 339 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 HCRTR2O43614 444 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 LRCH4O75427 683 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 BEST1O76090 585 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 RECQL4O94761 1208 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 AHSA1O95433 338 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 TFP02787 698 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 PROS1P07225 676 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 SCNN1AP37088 669 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 CASP9P55211 416 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 IRF5Q13568 498 aa10.88□□□□□ -0.67
LIMCH1-208ENST00000508501 DYRK1AQ13627 763 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms