RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 WNT9AO14904 365 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 MAP2K6P52564 334 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 TEKQ02763 1124 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 IQCCQ4KMZ1 466 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 PSAPL1Q6NUJ1 521 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 TRIM69Q86WT6 500 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 PIANPQ8IYJ0 282 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 GDPD1Q8N9F7 314 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 NPLOC4Q8TAT6 608 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 DNAJB3Q8WWF6 145 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 MARC2Q969Z3 335 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 SMAD5Q99717 465 aaKnown RBP12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 SAV1Q9H4B6 383 aaPredicted RBP12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 CLMPQ9H6B4 373 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 BEX1Q9HBH7 125 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 ATPIF1Q9UII2 106 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 COL11A2P13942 1736 aaPredicted RBP12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 LTBP1Q14766 1721 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 CFL1P23528 166 aaKnown RBP12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 ITGA1P56199 1179 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 SPHARQ15513 63 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 EXOC3L2Q2M3D2 409 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 DCAF4L1Q3SXM0 396 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 PRAMEF19Q5SWL8 479 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 CLVS2Q5SYC1 327 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 FAHD1Q6P587 224 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 MBOAT1Q6ZNC8 495 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 CCDC149Q6ZUS6 474 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 GLT6D1Q7Z4J2 308 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 STK40Q8N2I9 435 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 ANKRA2Q9H9E1 313 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 PCDHGB3Q9Y5G1 929 aa12.6□□□□□ -0.39
GAPVD1-220ENST00000497580 A0A1B0GVC2 190 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 A6NIN4 97 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 LOC730098B7Z3J9 87 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 FAM227AF5H4B4 570 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 PIRO00625 290 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ALDH1A1P00352 501 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ATXN1LP0C7T5 689 aaKnown RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 KELP23276 732 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 EPHA5P54756 1037 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 CCL23P55773 120 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 TMEM81Q6P7N7 255 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 CNIH2Q6PI25 160 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 PRSS42Q7Z5A4 293 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 CLECL1Q8IZS7 167 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 RTL3Q8N8U3 475 aaKnown RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ZFP41Q8N8Y5 198 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 KCNH6Q9H252 994 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 FAM124BQ9H5Z6 455 aaPredicted RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 MRPS7Q9Y2R9 242 aaKnown RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 SIP14410 1827 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 MEIS3P2A8K0S8 358 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 J3KTA2 159 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 MMP2P08253 660 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 SRCP12931 536 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 HOXB8P17481 243 aaPredicted RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 CNR2P34972 360 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 MAD2L1Q13257 205 aaPredicted RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 DDX39BQ13838 428 aaKnown RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ARHGEF7Q14155 803 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 PDZD3Q86UT5 571 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 CALHM3Q86XJ0 350 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 BBS7Q8IWZ6 715 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 SELENOMQ8WWX9 145 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ZIC5Q96T25 663 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 COPS8Q99627 209 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 SORBS1Q9BX66 1292 aaKnown RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ARNT2Q9HBZ2 717 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 RBFOX1Q9NWB1 397 aaKnown RBP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 FKBPLQ9UIM3 349 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 IFNA16P05015 189 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 PROS1P07225 676 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 SDHAF4Q5VUM1 108 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ADGRD2Q7Z7M1 963 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 SCN4BQ8IWT1 228 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 TAGAPQ8N103 731 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 RNF175Q8N4F7 328 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ST8SIA4Q92187 359 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 LPPQ93052 612 aa12.59□□□□□ -0.39
GAPVD1-220ENST00000497580 ANKRD31Q8N7Z5 1873 aa12.58□□□□□ -0.39
GAPVD1-220ENST00000497580 BRCA1P38398 1863 aaKnown RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 GTPBP1O00178 669 aaKnown RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 TOR1AO14656 332 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 FGF10O15520 208 aaPredicted RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 FFAR2O15552 330 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 HPGDSO60760 199 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 ACPPP15309 386 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 HOXA11P31270 313 aaPredicted RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 PGFP49763 221 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 SUOXP51687 545 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 EXOSC2Q13868 293 aaKnown RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 GLYR1Q49A26 553 aaPredicted RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 ALFQ53S48 1182 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 SKA2Q8WVK7 121 aaPredicted RBP12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 SPNS1Q9H2V7 528 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 SERHLQ9NQF3 203 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 LATS2Q9NRM7 1088 aa12.58□□□□□ -0.4
GAPVD1-220ENST00000497580 PPIEQ9UNP9 301 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms