RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ZCCHC10Q8TBK6 192 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 MDFIQ99750 246 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 MACROD1Q9BQ69 325 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 DEFB126Q9BYW3 111 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 ETNK1Q9HBU6 452 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 TIMMDC1Q9NPL8 285 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 CHRAC1Q9NRG0 131 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 CRIM1Q9NZV1 1036 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 B4GALT7Q9UBV7 327 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 Q9UFV3 132 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 COL6A5A8TX70 2615 aa13.29□□□□□ -0.28
PRPF40A-211ENST00000493468 NPIPA2E9PIF3 369 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 NPIPA3F8WFD2 350 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 ACOT7O00154 380 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 CBFA2T2O43439 604 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 ATE1O95260 518 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 IGHG3P01860 377 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 SLC35G6P0C7Q6 338 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 FMO4P31512 558 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 SKIV2L2P42285 1042 aaKnown RBP13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 GPR85P60893 370 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 SKP1P63208 163 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 KCNJ11Q14654 390 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 FLYWCH1Q4VC44 716 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 TMEM198Q66K66 360 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 MRNIPQ6NTE8 343 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 CLEC9AQ6UXN8 241 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 Q71RC1 249 aaPredicted RBP13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 MDGA2Q7Z553 956 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 PRIMA1Q86XR5 153 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 LIX1LQ8IVB5 337 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 VSTM4Q8IW00 320 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 REXO1L1PQ8IX06 675 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 TMEM156Q8N614 296 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 APCDD1LQ8NCL9 501 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 FAM222BQ8WU58 562 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 TCF12Q99081 682 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 REPIN1Q9BWE0 567 aaKnown RBP13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 PCBD2Q9H0N5 130 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 DEFB127Q9H1M4 99 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 DUSP10Q9Y6W6 482 aa13.28□□□□□ -0.28
PRPF40A-211ENST00000493468 IGKV3D-11A0A0A0MRZ8 115 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 A0A1B0GVC2 190 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 TCRBV16S1A1N1A0A5B0 115 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 ZNF860A6NHJ4 632 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 E7EVH7 732 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 PFDN6O15212 129 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 GALR3O60755 368 aaPredicted RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 WDR1O75083 606 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 ITGA10O75578 1167 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 PTMAP06454 111 aaKnown RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 CHRM3P20309 590 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 IMPA1P29218 277 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 STIP1P31948 543 aaKnown RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 NR0B1P51843 470 aaKnown RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 PPIAP62937 165 aaKnown RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 TERF2Q15554 542 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 RTL6Q6ICC9 239 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 SDCCAG8Q86SQ7 713 aaPredicted RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 SLC26A11Q86WA9 606 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 GPALPP1Q8IXQ4 340 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 PSD4Q8NDX1 1056 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 OR5T3Q8NGG3 340 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 OR5M9Q8NGP3 310 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 SLC13A3Q8WWT9 602 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 ASB11Q8WXH4 323 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 NANOS1Q8WY41 292 aaKnown RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 CCDC138Q96M89 665 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 PWWP2AQ96N64 755 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 SMC6Q96SB8 1091 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 DMRT3Q9NQL9 472 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 CCDC177Q9NQR7 707 aaPredicted RBP13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 DEPPQ9NTK1 212 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 ABCF3Q9NUQ8 709 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 KLHL42Q9P2K6 505 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 TFR2Q9UP52 801 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 PCDHA13Q9Y5I0 950 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 EML6Q6ZMW3 1958 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 MPDZO75970 2070 aa13.27□□□□□ -0.29
PRPF40A-211ENST00000493468 KIAA1324LA8MWY0 1029 aaPredicted RBP13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 GFYI3L273 518 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 SYT5O00445 386 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 GLSO94925 669 aaPredicted RBP13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 MPC1LP0DKB6 136 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 ARNTP27540 789 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 COILP38432 576 aaPredicted RBP13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 ADH7P40394 386 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 CLCN2P51788 898 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 TBPL1P62380 186 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 DAZAP2Q15038 168 aaPredicted RBP13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 TTLL9Q3SXZ7 439 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 RIPPLY2Q5TAB7 128 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 NDUFAF5Q5TEU4 345 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 CAPN13Q6MZZ7 669 aaPredicted RBP13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 ZNF585AQ6P3V2 769 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 SLC22A16Q86VW1 577 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 KRTAP1-3Q8IUG1 177 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 CYP4X1Q8N118 509 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 OTUD6BQ8N6M0 293 aa13.26□□□□□ -0.29
PRPF40A-211ENST00000493468 B3GNT7Q8NFL0 401 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms