RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 RPAP1Q9BWH6 1393 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 DMXL1Q9Y485 3027 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ABCC4O15439 1325 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CEP250Q9BV73 2442 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 LAMB1P07942 1786 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TEX13DA0A0J9YY54 714 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GOLGA6L7A0A1B0GV03 622 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1W2PQ09 198 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 HTR3EA5X5Y0 456 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PRR32B1ATL7 298 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SLCO1B7G3V0H7 640 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 H3BQF6 201 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 NTN3O00634 580 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TEX28O15482 410 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TTI1O43156 1089 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ARHGEF9O43307 516 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MBTPS2O43462 519 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 KLHL41O60662 606 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 DIAPH2O60879 1101 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PFDN1O60925 122 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SMIM24O75264 130 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PRKRAO75569 313 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SLU7O95391 586 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PIGNO95427 931 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ADCY5O95622 1261 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PAHP00439 452 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 KRT14P02533 472 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CD48P09326 243 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TROVE2P10155 538 aaKnown RBP eCLIP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ACP2P11117 423 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PCP11498 1178 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GZMAP12544 262 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SELLP14151 372 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GLULP15104 373 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GNB3P16520 340 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ALOX12P18054 663 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CAPN3P20807 821 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ELAVL4P26378 380 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 HPDP32754 393 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 S100A5P33763 92 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GARSP41250 739 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 NRIP1P48552 1158 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SLC9A3P48764 834 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 FNTAP49354 379 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 STAT2P52630 851 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 BPIFB3P59826 476 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GNB1P62873 340 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SIRPAP78324 504 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CX3CL1P78423 397 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CREB5Q02930 508 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 LGALS3BPQ08380 585 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MRPL28Q13084 256 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PPIL2Q13356 520 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 DYNC1I2Q13409 638 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SLC39A6Q13433 755 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PTPN14Q15678 1187 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SNCBQ16143 134 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 INAQ16352 499 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TPD52L1Q16890 204 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 C15orf59Q2T9L4 293 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC57Q2TAC2 916 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 BOLA3Q53S33 107 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 IGSF11Q5DX21 431 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MDH1BQ5I0G3 518 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 C1orf141Q5JVX7 400 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC158Q5M9N0 1113 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ARHGAP17Q68EM7 881 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 FAM53AQ6NSI3 398 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF530Q6P9A1 599 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 C1orf122Q6ZSJ8 110 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SZRD1Q7Z422 152 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TMEM173Q86WV6 379 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 COMMD2Q86X83 199 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ERO1BQ86YB8 467 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC50Q8IVM0 306 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CDK20Q8IZL9 346 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 LRRC43Q8N309 656 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ARHGAP18Q8N392 663 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 FBXO39Q8N4B4 442 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 RAB42Q8N4Z0 105 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ANKRD13CQ8N6S4 541 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ARL6IP6Q8N6S5 226 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 NIPA2Q8N8Q9 360 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF383Q8NA42 475 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TMEM178AQ8NBL3 297 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF485Q8NCK3 441 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MSANTD4Q8NCY6 345 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 PAPD5Q8NDF8 572 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 OR1J1Q8NGS3 322 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 GDAP1Q8TB36 358 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MRGPRDQ8TDS7 321 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ACMSDQ8TDX5 336 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC107Q8WV48 283 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ZFAND2BQ8WV99 257 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TEKT4Q8WW24 435 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TMEM190Q8WZ59 177 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 LRRC45Q96CN5 670 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MAGED4Q96JG8 741 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SGK494Q96LW2 274 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 C16orf45Q96MC5 204 aaPredicted RBP1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms