RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 NANOGP8Q6NSW7 305 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 MAGEE2Q8TD90 523 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 SNRNP27Q8WVK2 155 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 GTF2H4Q92759 462 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 VPS50Q96JG6 964 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 EGLN2Q96KS0 407 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 HAUS8Q9BT25 410 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 NANOGQ9H9S0 305 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 CLK4Q9HAZ1 481 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 IRAK4Q9NWZ3 460 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 TBC1D29Q9UFV1 150 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 ACOX3O15254 700 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 IL6P05231 212 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 CELA2BP08218 269 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 HSD17B2P37059 387 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 FNTBP49356 437 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 YPEL5P62699 121 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 SF1Q15637 639 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 TBC1D25Q3MII6 688 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 SPATS1Q496A3 300 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 OTUD3Q5T2D3 398 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 ANKRD34AQ69YU3 496 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 DNAJC14Q6Y2X3 702 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 FAM129CQ86XR2 697 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 SFTPA2Q8IWL1 248 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 LINC01555Q8NAE3 123 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 DRAXINQ8NBI3 349 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 ZNF740Q8NDX6 193 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 CHTF18Q8WVB6 975 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 METTL2AQ96IZ6 378 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 CAMK1GQ96NX5 476 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 OR2M4Q96R27 311 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 FERD3LQ96RJ6 166 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 KCTD14Q9BQ13 255 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 ALG2Q9H553 416 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 DMRT3Q9NQL9 472 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 ARMC1Q9NVT9 282 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 EML5Q05BV3 1969 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 PDZK1P1A8MUH7 402 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PGRP06401 933 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 TFPTP0C1Z6 253 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 RABIFP47224 123 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CCT8P50990 548 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CLCN2P51788 898 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 EEFSECP57772 596 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 MTPNP58546 118 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 MERTKQ12866 999 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PPP1R8Q12972 351 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 EIF2B5Q13144 721 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 FZD2Q14332 565 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 ANKDD1AQ495B1 522 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 TMEM214Q6NUQ4 689 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PRR23BQ6ZRT6 265 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 VN1R5Q7Z5H4 357 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 MSRB3Q8IXL7 192 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 SGCDQ92629 289 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 TESCQ96BS2 214 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 REPS1Q96D71 796 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 DUS3LQ96G46 650 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PPM1MQ96MI6 270 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CGREF1Q99674 301 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 IMP3Q9NV31 184 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 TAC3Q9UHF0 121 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 RUVBL1Q9Y265 456 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 ARHGEF17Q96PE2 2063 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 SPTY2D1-AS1A0A0U1RR47 76 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 FOXE1O00358 373 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 DFNA5O60443 496 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 SH3BGRLO75368 114 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CD247P20963 164 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 IDSP22304 550 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 HRH2P25021 359 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 FASP25445 335 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CD27P26842 260 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PSMB5P28074 263 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 ENTPD1P49961 510 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CDK9P50750 372 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PMS2P3Q13401 168 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 C1orf61Q13536 156 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 NEDD8Q15843 81 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 UAP1L1Q3KQV9 507 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PAGE2BQ5JRK9 111 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 FAM9CQ8IZT9 166 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 C1orf52Q8N6N3 182 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 SMPDL3AQ92484 453 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 ISOC1Q96CN7 298 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 DTNBP1Q96EV8 351 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 KLHDC7BQ96G42 594 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 ACAT2Q9BWD1 397 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 RPF2Q9H7B2 306 aaKnown RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 SERHLQ9NQF3 203 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 CUEDC1Q9NWM3 386 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-230ENST00000488543 VAPAQ9P0L0 249 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 PADI4Q9UM07 663 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 TSC22D4Q9Y3Q8 395 aa11.65□□□□□ -0.54
HDAC6-230ENST00000488543 SPAG17Q6Q759 2223 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 TRBV5-3A0A0A0MS03 114 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 TCRBV5S2A0A599 114 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 CLOCKO15516 846 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 LRATO95237 230 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms