RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 RABL3Q5HYI8 236 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 C6orf10Q5SRN2 563 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 NANOGP8Q6NSW7 305 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 SLC9B2Q86UD5 537 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 ZNF761Q86XN6 746 aaPredicted RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 SLC35F3Q8IY50 421 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 METTL4Q8N3J2 472 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 ANKRD53Q8N9V6 530 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 DNAJB8Q8NHS0 232 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 DNAJB14Q8TBM8 379 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 SLC26A7Q8TE54 656 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 PRAP1Q96NZ9 151 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 OR52E6Q96RD3 313 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 CGREF1Q99674 301 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 MS4A8Q9BY19 250 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 OR51B5Q9H339 312 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 NANOGQ9H9S0 305 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 NLGN3Q9NZ94 848 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 STOML1Q9UBI4 398 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 EP300Q09472 2414 aaPredicted RBP13.57□□□□□ -0.24
CUX1-209ENST00000487284 TRBV5-3A0A0A0MS03 114 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 TRBC2A0A5B9 178 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 ANKDD1BA6NHY2 528 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 PPM1DO15297 605 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 PCDH7O60245 1069 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 SH3BGRLO75368 114 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 CCNDBP1O95273 360 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 TBX6O95947 436 aaPredicted RBP13.57□□□□□ -0.24
CUX1-209ENST00000487284 ANPEPP15144 967 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 FASLGP48023 281 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 SLC34A1Q06495 639 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 BNIP2Q12982 314 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 PLCL1Q15111 1095 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 RBBP5Q15291 538 aaKnown RBP13.57□□□□□ -0.24
CUX1-209ENST00000487284 UGT8Q16880 541 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.57□□□□□ -0.24
CUX1-209ENST00000487284 LRIF1Q5T3J3 769 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 TMEM26Q6ZUK4 368 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 COMMD6Q7Z4G1 85 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 AMIGO1Q86WK6 493 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 BHLHE22Q8NFJ8 381 aaPredicted RBP13.57□□□□□ -0.24
CUX1-209ENST00000487284 OR2L3Q8NG85 312 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 OR4C6Q8NH72 309 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.57□□□□□ -0.24
CUX1-209ENST00000487284 ZFPM2Q8WW38 1151 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 LCN9Q8WX39 176 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 KCNH6Q9H252 994 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 SLC6A20Q9NP91 592 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 SERHLQ9NQF3 203 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 TMEM184CQ9NVA4 438 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 SPHK1Q9NYA1 384 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 NCDNQ9UBB6 729 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 ANGPTL2Q9UKU9 493 aa13.57□□□□□ -0.24
CUX1-209ENST00000487284 A0A096LPI6 279 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 SCAMP2O15127 329 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 PCDHGA12O60330 932 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 ERN1O75460 977 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 LRATO95237 230 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 CHRM5P08912 532 aaPredicted RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 ALPPL2P10696 532 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 MYF5P13349 255 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 HOXB9P17482 250 aaPredicted RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 HRH2P25021 359 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 KIR3DL1P43629 444 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 GSK3BP49841 420 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 SRSF11Q05519 484 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 ZNF763Q0D2J5 394 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 SF1Q15637 639 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 KHDRBS2Q5VWX1 349 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 ZCCHC8Q6NZY4 707 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 CAMKMTQ7Z624 323 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 GPR180Q86V85 440 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 ADGRF3Q8IZF5 1079 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 ARL10Q8N8L6 244 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 HIPK4Q8NE63 616 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 OR4E2Q8NGC2 313 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 OR8J3Q8NGG0 315 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 OR8J2Q8NGG1 315 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 PYDC1Q8WXC3 89 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 ITCHQ96J02 903 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 PPM1MQ96MI6 270 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 DUSP23Q9BVJ7 150 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 TRIM8Q9BZR9 551 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 PCDHAC1Q9H158 963 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 MUC13Q9H3R2 512 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 RMND5AQ9H871 391 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 MRPS30Q9NP92 439 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 RXFP3Q9NSD7 469 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 SEMA4GQ9NTN9 838 aa13.56□□□□□ -0.24
CUX1-209ENST00000487284 GMPR2Q9P2T1 348 aaKnown RBP13.56□□□□□ -0.24
CUX1-209ENST00000487284 GNG14A0A1W2PPG7 69 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 FEZF1A0PJY2 475 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 H3BNX3 289 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 AKAP10O43572 662 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 SIGLEC6O43699 453 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 DNAJA2O60884 412 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 CLEC3AO75596 197 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 C8BP07358 591 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 GSTM2P28161 218 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 CMPK1P30085 196 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms