RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 HIST2H2ACQ16777 129 aaPredicted RBP13.98□□□□□ -0.17
USP4-212ENST00000486549 MFSD4BQ5TF39 518 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 HIST2H2AA3Q6FI13 130 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 LAPTM4BQ86VI4 370 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 TDRPQ86YL5 185 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 ZC3H7AQ8IWR0 971 aaKnown RBP13.98□□□□□ -0.17
USP4-212ENST00000486549 SHISA5Q8N114 240 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 OR51Q1Q8NH59 317 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 ACMSDQ8TDX5 336 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 UTP15Q8TED0 518 aaKnown RBP13.98□□□□□ -0.17
USP4-212ENST00000486549 CAVIN3Q969G5 261 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 WDR34Q96EX3 536 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 RBCK1Q9BYM8 510 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 SLC6A16Q9GZN6 736 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 ING2Q9H160 280 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 NT5DC2Q9H857 520 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 ACTR8Q9H981 624 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 PPCSQ9HAB8 311 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 ACSS2Q9NR19 701 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 C14orf105Q9NVL8 296 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 C3orf18Q9UK00 162 aa13.98□□□□□ -0.17
USP4-212ENST00000486549 ZNF490Q9ULM2 529 aaPredicted RBP13.98□□□□□ -0.17
USP4-212ENST00000486549 TNPO3Q9Y5L0 923 aaKnown RBP13.98□□□□□ -0.17
USP4-212ENST00000486549 SCN2AQ99250 2005 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 IGLV3-12A0A075B6K2 115 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 A0A0G2JN53 185 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 URADA6NGE7 173 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 C4orf51C9J302 202 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 STX16-NPEPL1H3BU86 382 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 MASP2O00187 686 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 E2F3O00716 465 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 STX16O14662 325 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 SLC28A2O43868 658 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 GALR3O60755 368 aaPredicted RBP13.97□□□□□ -0.17
USP4-212ENST00000486549 CDH16O75309 829 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 JRKO75564 520 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 HEXBP07686 556 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 SERPINA6P08185 405 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 SBK3P0C264 359 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 MMP11P24347 488 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 XCR1P46094 333 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 PIK3CGP48736 1102 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 CCL11P51671 97 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 STXBP1P61764 594 aaKnown RBP13.97□□□□□ -0.17
USP4-212ENST00000486549 TBCCQ15814 346 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 FAAH2Q6GMR7 532 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 ATG14Q6ZNE5 492 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 PRICKLE2Q7Z3G6 844 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 VN1R5Q7Z5H4 357 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 APLFQ8IW19 511 aaPredicted RBP13.97□□□□□ -0.17
USP4-212ENST00000486549 AFAP1L2Q8N4X5 818 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 OR5T3Q8NGG3 340 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 ATP6V1E2Q96A05 226 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 IP6K3Q96PC2 410 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 PITHD1Q9GZP4 211 aaPredicted RBP13.97□□□□□ -0.17
USP4-212ENST00000486549 AICDAQ9GZX7 198 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 IPPKQ9H8X2 491 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 SEMA3GQ9NS98 782 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 P4HTMQ9NXG6 502 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 COPG2Q9UBF2 871 aa13.97□□□□□ -0.17
USP4-212ENST00000486549 A6NL46 340 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 A8MT66 165 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 IDSB3KWA1 339 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 SOCS6O14544 535 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 ERI3O43414 337 aaKnown RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 ALOX12BO75342 701 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 SH3BGRLO75368 114 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 CLEC3AO75596 197 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 WFS1O76024 890 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 IGHEP01854 428 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 GSTA1P08263 222 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 NUDT17P0C025 328 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 TAC1P20366 129 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 GSTM2P28161 218 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 HNRNPH1P31943 449 aaKnown RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 CASP2P42575 452 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 EMP2P54851 167 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 RRADP55042 308 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 SKP1P63208 163 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 DDX39BQ13838 428 aaKnown RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 MINDY4Q4G0A6 757 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 GRHL2Q6ISB3 625 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 MED27Q6P2C8 311 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 RPS27LQ71UM5 84 aaKnown RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 LCA5Q86VQ0 697 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 CNPY4Q8N129 248 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 TMEM102Q8N9M5 508 aaPredicted RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 C9orf43Q8TAL5 461 aaPredicted RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 UBE2E3Q969T4 207 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 GAL3ST3Q96A11 431 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 C8orf44Q96CB5 159 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 ABHD17AQ96GS6 310 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 PEX11GQ96HA9 241 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 FAR2Q96K12 515 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 NSUN5Q96P11 429 aaKnown RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 MESP1Q9BRJ9 268 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 NOL11Q9H8H0 719 aaKnown RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 SEMA4BQ9NPR2 832 aaPredicted RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 ZNF71Q9NQZ8 489 aaPredicted RBP13.96□□□□□ -0.17
USP4-212ENST00000486549 FBXL4Q9UKA2 621 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms