RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 DNALI1O14645 258 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ZBTB14O43829 449 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 KLHL41O60662 606 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 CNOT3O75175 753 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 VPS26AO75436 327 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC16A8O95907 504 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SYF2O95926 243 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ONECUT2O95948 504 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ALPPP05187 535 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 UMODP07911 640 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 F7P08709 466 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ITGAXP20702 1163 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 MMP11P24347 488 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 MCM3P25205 808 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 HMGA2P52926 109 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 PNLIPRP1P54315 467 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 MPP1Q00013 466 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 TSTA3Q13630 321 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 CRYMQ14894 314 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 IGFBP7Q16270 282 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 NADK2Q4G0N4 442 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 HSP90AA5PQ58FG0 334 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 COLEC12Q5KU26 742 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SPANXN3Q5MJ09 141 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 DCAF10Q5QP82 559 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 WASHC2DQ5SRD0 308 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 VWA5B1Q5TIE3 1220 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 FRMPD2BQ6IN97 320 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 LRRC8EQ6NSJ5 796 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SUSD1Q6UWL2 747 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 RNF44Q7L0R7 432 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 OVCH1Q7RTY7 1134 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 CPNE9Q8IYJ1 553 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 CNPY4Q8N129 248 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 GOLM1Q8NBJ4 401 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 CD200R1Q8TD46 325 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 INPP5DQ92835 1189 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 MIB2Q96AX9 1013 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 VPS50Q96JG6 964 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 PKP4Q99569 1192 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 GPR21Q99679 349 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SMAD5Q99717 465 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 EBNA1BP2Q99848 306 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ZFYVE21Q9BQ24 234 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 AARSD1Q9BTE6 412 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 DPH7Q9BTV6 452 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 NUDT9Q9BW91 350 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ACAT2Q9BWD1 397 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 DDX47Q9H0S4 455 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC26A1Q9H2B4 701 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC6A20Q9NP91 592 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC22A11Q9NSA0 550 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 P4HTMQ9NXG6 502 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 C5AR2Q9P296 337 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 CDC23Q9UJX2 597 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 PLAAQ9Y263 795 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 MED16Q9Y2X0 877 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 DOPEY2Q9Y3R5 2298 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 ESPL1Q14674 2120 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 SCN3AQ9NY46 2000 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 LOC105369274A0A096LPK9 316 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 LOC102723532A0A0G2JNH3 316 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 USP27XA6NNY8 438 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 H0YGG7 62 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 GFYI3L273 518 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 AGPSO00116 658 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 TXNDC9O14530 226 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 NRP2O60462 931 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 VPS4BO75351 444 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CLEC3AO75596 197 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 IPO13O94829 963 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 HAUS5O94927 633 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 EIF2S1P05198 315 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 C8GP07360 202 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 EZRP15311 586 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 SKIV2L2P42285 1042 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 OR1D4P47884 311 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 RGS4P49798 205 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 MLLT10P55197 1068 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 FOXL2P58012 376 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ARF3P61204 181 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 GNG11P61952 73 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ABATP80404 500 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 DR1Q01658 176 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 OCA2Q04671 838 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PRDX1Q06830 199 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 AIMP2Q13155 320 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 SP140Q13342 867 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 RAPSNQ13702 412 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 MYBPC3Q14896 1274 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 MORF4L2Q15014 288 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 MUM1Q2TAK8 710 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PRTGQ2VWP7 1150 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 THEMIS2Q5TEJ8 643 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ICE2Q659A1 982 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 JMJD6Q6NYC1 403 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PRMT9Q6P2P2 845 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 FBXO42Q6P3S6 717 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CYHR1Q6ZMK1 362 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 KIAA0408Q6ZU52 694 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms