RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 SNIP1Q8TAD8 396 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 DDX1Q92499 740 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 LGALS12Q96DT0 336 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CCDC120Q96HB5 630 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SLC38A3Q99624 504 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TTYH2Q9BSA4 534 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CD244Q9BZW8 370 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 KCNH6Q9H252 994 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 GKN1Q9NS71 199 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 EXTL2Q9UBQ6 330 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ATRNL1Q5VV63 1379 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MON2Q7Z3U7 1717 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TRAV6A0A075B6T7 132 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MYOCOSA0A1B0GUC4 107 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 RHPN2P1A8MT19 583 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SCAMP1O15126 338 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 DENRO43583 198 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PEX10O60683 326 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ALDOAP04075 364 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MAT2AP31153 395 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ACTR1BP42025 376 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MAP2K3P46734 347 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 NRIP1P48552 1158 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SLC9A3P48764 834 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PDX1P52945 283 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ACTR1AP61163 376 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CREB5Q02930 508 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 INCA1Q0VD86 236 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 NOGQ13253 232 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CEACAM7Q14002 265 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PTGR1Q14914 329 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MAD2L1BPQ15013 274 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TRAM2Q15035 370 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PPP1R3AQ16821 1122 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PIGGQ5H8A4 983 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ALG1LQ6GMV1 187 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TPRG1Q6ZUI0 275 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 DGLUCYQ7Z3D6 616 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 FOXRED2Q8IWF2 684 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 OR52E4Q8NGH9 312 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SHKBP1Q8TBC3 707 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CNIH3Q8TBE1 160 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 C12orf42Q96LP6 360 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PEBP4Q96S96 227 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TMEM246Q9BRR3 403 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 BEX2Q9BXY8 128 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF350Q9GZX5 532 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 OR51I1Q9H343 314 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 WDR26Q9H7D7 661 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 BEX1Q9HBH7 125 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ELOVL2Q9NXB9 296 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TAC3Q9UHF0 121 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TMEM5Q9Y2B1 443 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ASB3Q9Y575 518 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PCDHB3Q9Y5E6 796 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 VIRMAQ69YN4 1812 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CLDN7O95471 211 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 C6orf47O95873 294 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ANXA3P12429 323 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CELP19835 753 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MATN1P21941 496 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 AFF1P51825 1210 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 S100A10P60903 97 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 GINS1Q14691 196 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 VMACQ2NL98 169 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 HSD17B12Q53GQ0 312 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TPGS2Q68CL5 300 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ABHD13Q7L211 337 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CHERPQ8IWX8 916 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SUSD3Q96L08 255 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF471Q9BX82 626 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 OR51B5Q9H339 312 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 NLGN3Q9NZ94 848 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 C13orf42A0A1B0GVH6 325 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PRMT3O60678 531 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 COQ9O75208 318 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 USP2O75604 605 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 MT-ND2P03891 347 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 HTR1AP08908 422 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SRCP12931 536 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ELNP15502 786 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF30P17039 623 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 NPR2P20594 1047 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 TCEA1P23193 301 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SLC6A6P31641 620 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF763Q0D2J5 394 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PCBP2Q15366 365 aaKnown RBP eCLIP7.53□□□□□ -1.23e-6■■■■□ 20.8
NEDD9-204ENST00000448183 C10orf62Q5T681 223 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CDHR3Q6ZTQ4 885 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 CAMKVQ8NCB2 501 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 GALNT6Q8NCL4 622 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 DEFB118Q96PH6 123 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 OR2B2Q9GZK3 357 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SOX17Q9H6I2 414 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SERINC1Q9NRX5 453 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 HCN3Q9P1Z3 774 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 GNG8Q9UK08 70 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SH2B3Q9UQQ2 575 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF451Q9Y4E5 1061 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 PCDHGB5Q9Y5G0 923 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms