RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NOTCH2Q04721 2471 aa19.54■□□□□ 0.72
SDC1-205ENST00000447124 C4orf51C9J302 202 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 EDN3P14138 238 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 IL10P22301 178 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 SLC6A12P48065 614 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 AGTR2P50052 363 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 RAB8AP61006 207 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 POU4F1Q01851 419 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 SRSF11Q05519 484 aaKnown RBP19.53■□□□□ 0.72
SDC1-205ENST00000447124 RBBP5Q15291 538 aaKnown RBP19.53■□□□□ 0.72
SDC1-205ENST00000447124 NSDHLQ15738 373 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 C4orf17Q53FE4 359 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 SFT2D3Q587I9 215 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 MAATS1Q7Z4T9 603 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 TMPRSS11BQ86T26 416 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 KLHDC8AQ8IYD2 350 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 TBC1D20Q96BZ9 403 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 OR1F2PQ96R84 312 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 EGFL8Q99944 293 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 AIF1LQ9BQI0 150 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 RNF32Q9H0A6 362 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.53■□□□□ 0.721e-6■■□□□ 13.5
SDC1-205ENST00000447124 POPDC3Q9HBV1 291 aa19.53■□□□□ 0.72
SDC1-205ENST00000447124 MAGEB17A8MXT2 336 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 NDC80O14777 642 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 EIF3HO15372 352 aaKnown RBP eCLIP19.52■□□□□ 0.721e-11■■■□□ 17.8
SDC1-205ENST00000447124 TAPBPO15533 448 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 MAN1A2O60476 641 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 CLDN1O95832 211 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 FHP07954 510 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 ST13P50502 369 aaKnown RBP19.52■□□□□ 0.72
SDC1-205ENST00000447124 AP2B1P63010 937 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 RGS1Q08116 209 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 CALCOCO2Q13137 446 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 ABRAXAS2Q15018 415 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 ABHD17BQ5VST6 288 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 SLCO4C1Q6ZQN7 724 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 C3orf62Q6ZUJ4 267 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 CYS1Q717R9 158 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 TBC1D19Q8N5T2 526 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 BCORP1Q8N888 145 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 M1APQ8TC57 530 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 MAGEB10Q96LZ2 347 aaPredicted RBP19.52■□□□□ 0.72
SDC1-205ENST00000447124 DERL2Q9GZP9 239 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 OSGIN2Q9Y236 505 aa19.52■□□□□ 0.72
SDC1-205ENST00000447124 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.52■□□□□ 0.72
SDC1-205ENST00000447124 TCRBV9S1A1TA0A576 114 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 OR5H15A6NDH6 313 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 FAM159BA6NKW6 160 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 FAM227AF5H4B4 570 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 PHGDHO43175 533 aaKnown RBP19.51■□□□□ 0.71
SDC1-205ENST00000447124 PRAMEF4O60810 478 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 B4GALT2O60909 372 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 WISP2O76076 250 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 C1GALT1C1LP0DN25 315 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 GMPRP36959 345 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 HNMTP50135 292 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 BTG2P78543 158 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 ZNF33BQ06732 778 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 ACTN3Q08043 901 aaPredicted RBP19.51■□□□□ 0.71
SDC1-205ENST00000447124 USP10Q14694 798 aaKnown RBP19.51■□□□□ 0.71
SDC1-205ENST00000447124 PRAMEF9Q5VWM5 478 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 PAPD4Q6PIY7 484 aaKnown RBP19.51■□□□□ 0.71
SDC1-205ENST00000447124 FAM180AQ6UWF9 173 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 ADAMTSL2Q86TH1 951 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 TRPV3Q8NET8 790 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 C5orf34Q96MH7 638 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 KCNK13Q9HB14 408 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 OLAHQ9NV23 265 aa19.51■□□□□ 0.71
SDC1-205ENST00000447124 CPAMD8Q8IZJ3 1885 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 NCF1BA6NI72 391 aaPredicted RBP19.5■□□□□ 0.71
SDC1-205ENST00000447124 NCF1CA8MVU1 366 aaPredicted RBP19.5■□□□□ 0.71
SDC1-205ENST00000447124 WDR47O94967 919 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 UQCRHP07919 91 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 SERPINA6P08185 405 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 CCDC166P0CW27 439 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 NCF1P14598 390 aaPredicted RBP19.5■□□□□ 0.71
SDC1-205ENST00000447124 CD1DP15813 335 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 COL8A1P27658 744 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 CASQ1P31415 396 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 KCNC1P48547 511 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 TDGF1P3P51864 188 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 SLC12A2P55011 1212 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 OR4D2P58180 307 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 TGFBIQ15582 683 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 FBXO48Q5FWF7 155 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 ACER2Q5QJU3 275 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 ZDHHC24Q6UX98 284 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 ABHD13Q7L211 337 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 CRLF3Q8IUI8 442 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 BEST3Q8N1M1 668 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 ESAMQ96AP7 390 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 GPR22Q99680 433 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 RBBP8Q99708 897 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 CPNE1Q99829 537 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 TMEM79Q9BSE2 394 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 MMP25Q9NPA2 562 aa19.5■□□□□ 0.71
SDC1-205ENST00000447124 UNC79Q9P2D8 2635 aa19.49■□□□□ 0.71
SDC1-205ENST00000447124 PRAMEF2O60811 474 aa19.49■□□□□ 0.71
SDC1-205ENST00000447124 FAM155BO75949 473 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms