RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 H7C0S8 307 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 PLK4O00444 970 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CTDSP2O14595 271 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SLC28A2O43868 658 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 UPK1BO75841 260 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CSF2P04141 144 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 POLR2EP19388 210 aaKnown RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 PSMA1P25786 263 aaKnown RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 SLC16A1P53985 500 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 AP1S2P56377 157 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CSNK2BP67870 215 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SP3Q02447 781 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 STEAP3Q658P3 488 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 ENTHD1Q8IYW4 607 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CIDECQ96AQ7 238 aaPredicted RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 KLF16Q9BXK1 252 aaPredicted RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 SSR3Q9UNL2 185 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 POFUT2Q9Y2G5 429 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 ATG13O75143 517 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SLC16A8O95907 504 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 TCEA1P23193 301 aaKnown RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 NRIP1P48552 1158 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 RGNQ15493 299 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 C22orf39Q6P5X5 142 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SERPINA11Q86U17 422 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 LILRA3Q8N6C8 439 aaPredicted RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 ENKURQ8TC29 256 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 ZIC5Q96T25 663 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SIAEQ9HAT2 523 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 RLIMQ9NVW2 624 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 PRKAB1Q9Y478 270 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 PAPPA2Q9BXP8 1791 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 A6NL46 340 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CLCA1A8K7I4 914 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 ARHGEF9O43307 516 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 JRKO75564 520 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 ERAL1O75616 437 aaKnown RBP11.43□□□□□ -0.58
MSH6-204ENST00000445503 NR2F1P10589 423 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 MYL12AP19105 171 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CBLL1Q75N03 491 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 GGHQ92820 318 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 FKBP10Q96AY3 582 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 DIRAS2Q96HU8 199 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CASD1Q96PB1 797 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 CENPOQ9BU64 300 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SEMA3GQ9NS98 782 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 RNF186Q9NXI6 227 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 NINQ8N4C6 2090 aa11.43□□□□□ -0.58
MSH6-204ENST00000445503 SOBPA7XYQ1 873 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 AREL1O15033 823 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 CCL16O15467 120 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 F11P03951 625 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 BCHEP06276 602 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 INHBBP09529 407 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 UGT2B15P54855 530 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 TARDBPQ13148 414 aaKnown RBP eCLIP11.42□□□□□ -0.583e-8■■■■■ 32.2
MSH6-204ENST00000445503 KDM4DQ6B0I6 523 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 USP7Q93009 1102 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 ITPKCQ96DU7 683 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 TRNT1Q96Q11 434 aaKnown RBP11.42□□□□□ -0.58
MSH6-204ENST00000445503 DUSP21Q9H596 190 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 SIRT5Q9NXA8 310 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 PLAGL1Q9UM63 463 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 CFAP20Q9Y6A4 193 aaKnown RBP11.42□□□□□ -0.58
MSH6-204ENST00000445503 AGAP5A6NIR3 686 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 PTHP01270 115 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 CTGFP29279 349 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 BUD31P41223 144 aaPredicted RBP11.42□□□□□ -0.58
MSH6-204ENST00000445503 CCSMST1Q4G0I0 132 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 SYT6Q5T7P8 510 aaPredicted RBP11.42□□□□□ -0.58
MSH6-204ENST00000445503 C19orf18Q8NEA5 215 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 GANCQ8TET4 914 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 SCRN2Q96FV2 425 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 YME1L1Q96TA2 773 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 YIPF4Q9BSR8 244 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 ASPNQ9BXN1 380 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 AKIP1Q9NQ31 210 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 SEC14L3Q9UDX4 400 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 FAM227AF5H4B4 570 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 PCDH17O14917 1159 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 CA12O43570 354 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 SOCS5O75159 536 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 CNR2P34972 360 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 GPR1P46091 355 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 IFITM3Q01628 133 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 ZC3H12BQ5HYM0 836 aaKnown RBP11.42□□□□□ -0.58
MSH6-204ENST00000445503 PRSS36Q5K4E3 855 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 DCST1Q5T197 706 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 ERAP2Q6P179 960 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 GDPD4Q6W3E5 623 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 USP30Q70CQ3 517 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 RAB43Q86YS6 212 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 TRIM48Q8IWZ4 208 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 DYNC2LI1Q8TCX1 351 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 OR2AG1Q9H205 316 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 NEK6Q9HC98 313 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 SERHLQ9NQF3 203 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 HSPE1-MOB4S4R3N1 261 aa11.42□□□□□ -0.58
MSH6-204ENST00000445503 CENPFP49454 3210 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms