RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PCSK2P16519 638 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 BCL6P41182 706 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 TAS2R50P59544 299 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 GPR18Q14330 331 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 SPATS1Q496A3 300 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 ZNF385BQ569K4 471 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 LCN8Q6JVE9 175 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 MMP21Q8N119 569 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 PJA1Q8NG27 643 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 C16orf78Q8WTQ4 265 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 CANT1Q8WVQ1 401 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 ZUFSPQ96AP4 578 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 PANX1Q96RD7 426 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 DUSP26Q9BV47 211 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 SYNPO2LQ9H987 977 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 SH3BP4Q9P0V3 963 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 SNX13Q9Y5W8 968 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 PPM1DO15297 605 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 WNT1P04628 370 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 HRH2P25021 359 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 TPP2P29144 1249 aaPredicted RBP20.19■□□□□ 0.82
PTPRF-207ENST00000436724 SLC14A1Q13336 389 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 CPTPQ5TA50 214 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 TMEM132CQ8N3T6 1108 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 SPEM1Q8N4L4 309 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 TBCDQ9BTW9 1192 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 CHRDQ9H2X0 955 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 AP4S1Q9Y587 144 aa20.19■□□□□ 0.82
PTPRF-207ENST00000436724 A0A0G2JN53 185 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 KDM1AO60341 852 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 CPSF4O95639 269 aaKnown RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 HTR1EP28566 365 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 CHN2P52757 468 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 TAF8Q7Z7C8 310 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 TRIM48Q8IWZ4 208 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 ST13P4Q8IZP2 240 aaPredicted RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 MARVELD2Q8N4S9 558 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 ADCY4Q8NFM4 1077 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 NELL1Q92832 810 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 NT5DC2Q9H857 520 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 PAPOLBQ9NRJ5 636 aaKnown RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 ADGRE2Q9UHX3 823 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 METTL12A8MUP2 240 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 CTSEP14091 401 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 HPCAL1P37235 193 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 RPL6Q02878 288 aaKnown RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 C2orf80Q0P641 193 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 DUOXA1Q1HG43 343 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 LIN52Q52LA3 116 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 PARGQ86W56 976 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 DTWD1Q8N5C7 304 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 TMEM102Q8N9M5 508 aaPredicted RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 CREB3L4Q8TEY5 395 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 CPPED1Q9BRF8 314 aaPredicted RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 GSDMCQ9BYG8 508 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 AICDAQ9GZX7 198 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 RPF2Q9H7B2 306 aaKnown RBP20.18■□□□□ 0.82
PTPRF-207ENST00000436724 LHX9Q9NQ69 397 aa20.18■□□□□ 0.82
PTPRF-207ENST00000436724 MDC1Q14676 2089 aaKnown RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 EME2A4GXA9 379 aaPredicted RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 BSGP35613 385 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 TRIM73Q86UV7 250 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 NAGSQ8N159 534 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 OR10G6Q8NH81 332 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 MIR1-1HGQ9H1L0 117 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 REEP4Q9H6H4 257 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 KAT8Q9H7Z6 458 aaKnown RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 FAM120CQ9NX05 1096 aaKnown RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 UBAP1Q9NZ09 502 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 CPNE7Q9UBL6 633 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 TRBC2A0A5B9 178 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 IL3P08700 152 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 CD27P26842 260 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 CMPK1P30085 196 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 NUDT1P36639 197 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 PLA2G16P53816 162 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 ABATP80404 500 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 FXNQ16595 210 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 PRSS53Q2L4Q9 553 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 CCNYL2Q5T2Q4 361 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 FAM71E1Q6IPT2 247 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 FAM180BQ6P0A1 224 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 ZNF621Q6ZSS3 439 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 MSANTD1Q6ZTZ1 278 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 UBE3DQ7Z6J8 389 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 ZNF761Q86XN6 746 aaPredicted RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 OR2T12Q8NG77 320 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 SLC37A2Q8TED4 501 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 STARD8Q92502 1023 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 CLDN23Q96B33 292 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 COQ8BQ96D53 544 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 FCRL4Q96PJ5 515 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 PITHD1Q9GZP4 211 aaPredicted RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 MYNNQ9NPC7 610 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 TMEM184CQ9NVA4 438 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 APOBEC3BQ9UH17 382 aaKnown RBP20.17■□□□□ 0.82
PTPRF-207ENST00000436724 AURKCQ9UQB9 309 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 PCDHB3Q9Y5E6 796 aa20.17■□□□□ 0.82
PTPRF-207ENST00000436724 AQP12BA6NM10 295 aa20.16■□□□□ 0.82
PTPRF-207ENST00000436724 NDUFS4O43181 175 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms