RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 FCGR2BP31994 310 aaPredicted RBP3.12□□□□□ -1.91
LINC01040-201ENST00000425048 FCGR2CP31995 323 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 CBX1P83916 185 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 GCKRQ14397 625 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 KNOP1Q1ED39 458 aaKnown RBP3.12□□□□□ -1.91
LINC01040-201ENST00000425048 SLC22A6Q4U2R8 563 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 HSP90AB3PQ58FF7 597 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 SZRD1Q7Z422 152 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 ZSCAN30Q86W11 494 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 TMCO6Q96DC7 493 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 PSMD1Q99460 953 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 MYH16Q9H6N6 1097 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 NOL11Q9H8H0 719 aaKnown RBP3.12□□□□□ -1.91
LINC01040-201ENST00000425048 RNF121Q9H920 327 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 GRPEL1Q9HAV7 217 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 HAO2Q9NYQ3 351 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 RAI14Q9P0K7 980 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 DHRS4-AS1Q9P1J3 65 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 POLKQ9UBT6 870 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 SPATA2Q9UM82 520 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 SALL1Q9NSC2 1324 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
LINC01040-201ENST00000425048 MYOM3Q5VTT5 1437 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 KLF18A0A0U1RQI7 1052 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 F3P13726 295 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 ELK1P19419 428 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 CRYBA2P53672 197 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 MAP2K1Q02750 393 aaPredicted RBP3.11□□□□□ -1.91
LINC01040-201ENST00000425048 ILF2Q12905 390 aaKnown RBP3.11□□□□□ -1.91
LINC01040-201ENST00000425048 POM121L1PQ3SYA9 428 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 SASS6Q6UVJ0 657 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 IGFL2Q6UWQ7 119 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 MCM10Q7L590 875 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 SMC5Q8IY18 1101 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 TTC30BQ8N4P2 665 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 PGM2Q96G03 612 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 MYCBPQ99417 103 aaPredicted RBP3.11□□□□□ -1.91
LINC01040-201ENST00000425048 NDNQ99608 321 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 CPNE1Q99829 537 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 TSPYL1Q9H0U9 437 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 ANKZF1Q9H8Y5 726 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 CLEC4EQ9ULY5 219 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 KIF16BQ96L93 1317 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 NINLQ9Y2I6 1382 aa3.11□□□□□ -1.91
LINC01040-201ENST00000425048 SCAPERQ9BY12 1400 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 CEP164Q9UPV0 1460 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 ERICH3Q5RHP9 1530 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 A0A1W2PPM1 405 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 CCDC189A1A4V9 331 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 ZNF253O75346 499 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 GJB3O75712 270 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 YES1P07947 543 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 CCDC172P0C7W6 258 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 GABPB1Q06547 395 aaPredicted RBP3.1□□□□□ -1.91
LINC01040-201ENST00000425048 CCDC184Q52MB2 194 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 SPANXN4Q5MJ08 99 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 GPATCH11Q8N954 259 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 OR6T1Q8NGN1 323 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 U2AF1L4Q8WU68 220 aaKnown RBP3.1□□□□□ -1.91
LINC01040-201ENST00000425048 PRPF31Q8WWY3 499 aaKnown RBP3.1□□□□□ -1.91
LINC01040-201ENST00000425048 ZNF799Q96GE5 643 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 PPP1R16AQ96I34 528 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 TIGD1Q96MW7 591 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 SP140LQ9H930 580 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 ZNF275Q9NSD4 429 aaPredicted RBP3.1□□□□□ -1.91
LINC01040-201ENST00000425048 DEPPQ9NTK1 212 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 THYN1Q9P016 225 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 NUDCQ9Y266 331 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 RAD50Q92878 1312 aa3.1□□□□□ -1.91
LINC01040-201ENST00000425048 RSF1Q96T23 1441 aaPredicted RBP3.1□□□□□ -1.91
LINC01040-201ENST00000425048 KDM5BQ9UGL1 1544 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 SCRIBQ14160 1630 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 A6NCN8 305 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 DOK2O60496 412 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 ZBED4O75132 1171 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 TSPAN9O75954 239 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 GSRP00390 522 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 IGHG1P01857 330 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 CCDC173Q0VFZ6 552 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 ZRANB3Q5FWF4 1079 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 LINC00346Q8IVM7 164 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 OTUD6BQ8N6M0 293 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 OR1B1Q8NGR6 318 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 NSUN4Q96CB9 384 aaKnown RBP3.09□□□□□ -1.91
LINC01040-201ENST00000425048 LURAP1Q96LR2 239 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 MAPKAP1Q9BPZ7 522 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 DEFB126Q9BYW3 111 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 RIMS4Q9H426 269 aaPredicted RBP3.09□□□□□ -1.91
LINC01040-201ENST00000425048 DNAJC4Q9NNZ3 241 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 PIH1D3Q9NQM4 214 aaKnown RBP3.09□□□□□ -1.91
LINC01040-201ENST00000425048 OLAHQ9NV23 265 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 SLC12A6Q9UHW9 1150 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 KIF3AQ9Y496 699 aa3.09□□□□□ -1.91
LINC01040-201ENST00000425048 IBTKQ9P2D0 1353 aaPredicted RBP3.09□□□□□ -1.92
LINC01040-201ENST00000425048 RRBP1Q9P2E9 1410 aaKnown RBP3.09□□□□□ -1.92
LINC01040-201ENST00000425048 TCP10L2B9ZVM9 353 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 ENTPD3O75355 529 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 PIGRP01833 764 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 SERPING1P05155 500 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 HSP90AB1P08238 724 aaKnown RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms