RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GKN3PP0CG01 181 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SOX9P48436 509 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ELF3P78545 371 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 DLX2Q07687 328 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 PMS2P3Q13401 168 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 USF2Q15853 346 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SLC5A9Q2M3M2 681 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 PRRT3Q5FWE3 981 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ABHD17BQ5VST6 288 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 PRSS55Q6UWB4 352 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF280BQ86YH2 543 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 FOXRED2Q8IWF2 684 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF283Q8N7M2 679 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CLEC1AQ8NC01 280 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 RCBTB1Q8NDN9 531 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 OR9A1PQ8NGU1 263 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SLC5A11Q8WWX8 675 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 MAFIPQ8WZ33 124 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 COL21A1Q96P44 957 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 TBX5Q99593 518 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 P2RY13Q9BPV8 354 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 DPAGT1Q9H3H5 408 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CHRAC1Q9NRG0 131 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CDH22Q9UJ99 828 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 A0A087WUU8 490 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CAPN8A6NHC0 703 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 PPM1BO75688 479 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 GALTP07902 379 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 H2BFMP0C1H6 154 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CDK2P24941 298 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ERVK-16P61578 105 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 GSTM4Q03013 218 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 FRG2Q64ET8 278 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 KIAA1161Q6NSJ0 714 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF852Q6ZMS4 543 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF572Q7Z3I7 529 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CTU1Q7Z7A3 348 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 DCP2Q8IU60 420 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 TOMM5Q8N4H5 51 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 FANK1Q8TC84 345 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 FCAMRQ8WWV6 532 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 BMFQ96LC9 184 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 FRG2BQ96QU4 278 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM209Q96SK2 561 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 RIOK2Q9BVS4 552 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 BCAS3Q9H6U6 928 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 TBCCD1Q9NVR7 557 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 FZD4Q9ULV1 537 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SCML2Q9UQR0 700 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SLC22A14Q9Y267 594 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SETD1AO15047 1707 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 XRN1Q8IZH2 1706 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 USP2O75604 605 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 UGT1A4P22310 534 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 GGT2P36268 569 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 YAP1P46937 504 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 KCNC1P48547 511 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 AFF1P51825 1210 aaKnown RBP6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SLC26A5P58743 744 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 SLC3A1Q07837 685 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 EML3Q32P44 896 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 TPRG1LQ5T0D9 272 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 RAB12Q6IQ22 244 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 KBTBD6Q86V97 674 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 PLD5Q8N7P1 536 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 CCDC120Q96HB5 630 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 KCNC2Q96PR1 638 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 S100A14Q9HCY8 104 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 Q9Y3F1 56 aa6.65□□□□□ -1.35
SCN1A-204ENST00000423058 COL14A1Q05707 1796 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SHBGP04278 402 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 IFNA4P05014 189 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 IL3P08700 152 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MYCLP1P12525 358 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 HOXD8P13378 290 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 FASLGP48023 281 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MYLK3Q32MK0 819 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GLT8D1Q68CQ7 371 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 PDSS2Q86YH6 399 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 OR13C3Q8NGS6 347 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GNPDA2Q8TDQ7 276 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MSI2Q96DH6 328 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ALPK1Q96QP1 1244 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CPXM1Q96SM3 734 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 URM1Q9BTM9 101 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TREM1Q9NP99 234 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 FKBPLQ9UIM3 349 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ST14Q9Y5Y6 855 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 C3P01024 1663 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TISP43B9A030 160 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 J3QLW9 94 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SOCS5O75159 536 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 OR4F21O95013 312 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF19P17023 458 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 RRAS2P62070 204 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 EMC10Q5UCC4 262 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 AADACL4Q5VUY2 407 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TMPRSS9Q7Z410 1059 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 LHFPL3Q86UP9 236 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 PPP1R35Q8TAP8 253 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms