RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 F2P00734 622 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 FAM157BP0CG42 384 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 TNFRSF1BP20333 461 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 AQP1P29972 269 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 RPL9P32969 192 aaKnown RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 MAPKAPK2P49137 400 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 DSC3Q14574 896 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 UGT8Q16880 541 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 EXOC3L2Q2M3D2 409 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 METTL2BQ6P1Q9 378 aaKnown RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 GLCCI1Q86VQ1 547 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 MON1AQ86VX9 555 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 CLECL1Q8IZS7 167 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 SELENOMQ8WWX9 145 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 KIAA1143Q96AT1 154 aaPredicted RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 ZC3HAV1LQ96H79 300 aaKnown RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 TLR8Q9NR97 1041 aaKnown RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 NDUFB11Q9NX14 153 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 PLEKHB1Q9UF11 243 aaPredicted RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 ITM2BQ9Y287 266 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 PCDHB1Q9Y5F3 818 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 ARL5CA6NH57 179 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 SMLR1H3BR10 107 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 YY2O15391 372 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 NBNO60934 754 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 PDE9AO76083 593 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 HLA-DQB1P01920 261 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 HLA-EP13747 358 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 NAGAP17050 411 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 PTX3P26022 381 aaPredicted RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 CDH12P55289 794 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 ARPP19P56211 112 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 CDC42P60953 191 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 TAGLNQ01995 201 aaKnown RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 EFEMP1Q12805 493 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 CD300LGQ6UXG3 332 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 MBOAT1Q6ZNC8 495 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 DDX53Q86TM3 631 aaKnown RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 SPATA2LQ8IUW3 424 aaPredicted RBP10.3□□□□□ -0.76
USP54-204ENST00000422491 SPPL2AQ8TCT8 520 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 MAL2Q969L2 176 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 OMA1Q96E52 524 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 CMTM7Q96FZ5 175 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 DIRAS2Q96HU8 199 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 ELP3Q9H9T3 547 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 TPT1P8Q9HAU6 139 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 SLC25A19Q9HC21 320 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 GLTPQ9NZD2 209 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 CLEC2DQ9UHP7 191 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 AUP1Q9Y679 476 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 AP1M2Q9Y6Q5 423 aa10.3□□□□□ -0.76
USP54-204ENST00000422491 KCNE1BA0A087WTH5 132 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PRAMEF25A6NGN4 478 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 ZAR1LA6NP61 321 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 ANKRD66B4E2M5 251 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 FZD9O00144 591 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 WWP2O00308 870 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PROM1O43490 865 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 TPST2O60704 377 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 B3GAT3O94766 335 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 TBX18O95935 607 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 MSL3P1P0C860 447 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CKMT1AP12532 417 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CTRB1P17538 263 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 MAPK1P28482 360 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SSTR4P31391 388 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 MAP2K3P46734 347 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SELENOWP63302 87 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SPIBQ01892 262 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 MXD1Q05195 221 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SPHARQ15513 63 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CTRB2Q6GPI1 263 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 BBS7Q8IWZ6 715 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 LAS2Q8IYD9 372 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 DUSP18Q8NEJ0 188 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 APOLD1Q96LR9 279 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SPATA9Q9BWV2 254 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 B3GNT4Q9C0J1 378 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 FZD3Q9NPG1 666 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 FAM105AQ9NUU6 356 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 ING3Q9NXR8 418 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 FTSJ1Q9UET6 329 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 FZD4Q9ULV1 537 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 NDRG2Q9UN36 371 aaKnown RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 SCML2Q9UQR0 700 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PCDHB11Q9Y5F2 797 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 POLR2AP24928 1970 aaKnown RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 LINC00862A6NCI5 91 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 NPIPB8E9PQR5 432 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 MPZL2O60487 215 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 STK16O75716 305 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SCO1O75880 301 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CDRT1O95170 752 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CPSF4O95639 269 aaKnown RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 IL1AP01583 271 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 HBQ1P09105 142 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 TSPAN19P0C672 248 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 ACPPP15309 386 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 AMD1P17707 334 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PRPS1L1P21108 318 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms