RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 FOXD4Q12950 439 aaPredicted RBP9.43□□□□□ -0.9
CD44-206ENST00000415148 PPIGQ13427 754 aaKnown RBP eCLIP9.43□□□□□ -0.9
CD44-206ENST00000415148 IRF3Q14653 427 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 SPIN4Q56A73 249 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 NXNL2Q5VZ03 156 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 CCBE1Q6UXH8 406 aaPredicted RBP9.43□□□□□ -0.9
CD44-206ENST00000415148 NANOGNBQ7Z5D8 188 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 THOC6Q86W42 341 aaKnown RBP9.43□□□□□ -0.9
CD44-206ENST00000415148 VRK3Q8IV63 474 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 GOT1L1Q8NHS2 421 aaPredicted RBP9.43□□□□□ -0.9
CD44-206ENST00000415148 C9orf43Q8TAL5 461 aaPredicted RBP9.43□□□□□ -0.9
CD44-206ENST00000415148 FAM83CQ9BQN1 747 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 THSD1Q9NS62 852 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 RLIMQ9NVW2 624 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 C14orf119Q9NWQ9 140 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 ENOPH1Q9UHY7 261 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 BOLA1Q9Y3E2 137 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 PCDHGA2Q9Y5H1 932 aa9.43□□□□□ -0.9
CD44-206ENST00000415148 A0A1W2PQ45 241 aaPredicted RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 A0A1W2PQY0 241 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 TMEM229AB2RXF0 380 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 QSOX1O00391 747 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 KMOO15229 486 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 TLL1O43897 1013 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 GSTM1P09488 218 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ALOX12P18054 663 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 IDSP22304 550 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 AQP1P29972 269 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 S100A5P33763 92 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 MAPK9P45984 424 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 PNLIPRP1P54315 467 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 EPHB3P54753 998 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 COPZ1P61923 177 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 MICAQ29983 383 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 XKR6Q5GH73 641 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 TPRG1LQ5T0D9 272 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 CCDC80Q76M96 950 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ZNF605Q86T29 641 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 NPAS3Q8IXF0 933 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ARL14EPQ8N8R7 260 aaPredicted RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 OR4C15Q8NGM1 316 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ZNF675Q8TD23 568 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 SH3KBP1Q96B97 665 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 IGSF21Q96ID5 467 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 FEVQ99581 238 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 BHLHE41Q9C0J9 482 aaPredicted RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 STARD7Q9NQZ5 370 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 RAD18Q9NS91 495 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 GPR83Q9NYM4 423 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 NDUFAF4Q9P032 175 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 MBD1Q9UIS9 605 aaPredicted RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 TMPRSS11EQ9UL52 423 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 MAFFQ9ULX9 164 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 IFT52Q9Y366 437 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 PCDHGA3Q9Y5H0 932 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 PEX16Q9Y5Y5 336 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 PNMA8CA0A1B0GUJ8 204 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 NDUFB5O43674 189 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 PSIP1O75475 530 aaKnown RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 GCM2O75603 506 aaPredicted RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 POP4O95707 220 aaKnown RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 PTHP01270 115 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 SRPRAP08240 638 aaKnown RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 C1SP09871 688 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 SRCP12931 536 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ELNP15502 786 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 GABRB1P18505 474 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 CD22P20273 847 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 LHCGRP22888 699 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ETV6P41212 452 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 POLR2LP62875 67 aaKnown RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 RAE1P78406 368 aaKnown RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 DOC2AQ14183 400 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 E2F2Q14209 437 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 IFI44LQ53G44 452 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 C10orf62Q5T681 223 aaPredicted RBP9.42□□□□□ -0.9
CD44-206ENST00000415148 IL17RDQ8NFM7 739 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 OR10G2Q8NGC3 310 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 MAL2Q969L2 176 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 TIFAQ96CG3 184 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 SLC22A12Q96S37 553 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 VN1R3Q9BXE9 311 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ATG10Q9H0Y0 220 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 NEK6Q9HC98 313 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 ATP6V1HQ9UI12 483 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 MKLN1Q9UL63 735 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 HS3ST2Q9Y278 367 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 BTBD3Q9Y2F9 522 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 TMEM98Q9Y2Y6 226 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 TESMINQ9Y4I5 508 aa9.42□□□□□ -0.9
CD44-206ENST00000415148 SH3D21A4FU49 640 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 MPZL2O60487 215 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 AOC2O75106 756 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 IFNA14P01570 189 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 STSP08842 583 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 ANXA4P09525 319 aaPredicted RBP9.41□□□□□ -0.9
CD44-206ENST00000415148 ZNF30P17039 623 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 ALDH9A1P49189 494 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 DGKEP52429 567 aa9.41□□□□□ -0.9
CD44-206ENST00000415148 HMGA2P52926 109 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms