RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 POP5Q969H6 163 aaKnown RBP18.14■□□□□ 0.49
USP39-202ENST00000409025 TOE1Q96GM8 510 aaKnown RBP18.14■□□□□ 0.49
USP39-202ENST00000409025 SORBS1Q9BX66 1292 aaKnown RBP18.14■□□□□ 0.49
USP39-202ENST00000409025 YY1AP1Q9H869 796 aa18.14■□□□□ 0.49
USP39-202ENST00000409025 TMEM184CQ9NVA4 438 aa18.14■□□□□ 0.49
USP39-202ENST00000409025 TRNAU1APQ9NX07 287 aaKnown RBP18.14■□□□□ 0.49
USP39-202ENST00000409025 ERVK-11Q9UQG0 969 aa18.14■□□□□ 0.49
USP39-202ENST00000409025 AP4B1Q9Y6B7 739 aa18.14■□□□□ 0.49
USP39-202ENST00000409025 SAC3D1A6NKF1 404 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 CLEC3AO75596 197 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 LDLRP01130 860 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 RETP07949 1114 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 IL3P08700 152 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 CKMT2P17540 419 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 LRRC32Q14392 662 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 INTS11Q5TA45 600 aaKnown RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 PPP4R4Q6NUP7 873 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 ABI3BPQ7Z7G0 1075 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 SYNPOQ8N3V7 929 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 FBXO30Q8TB52 745 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 LCN9Q8WX39 176 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 RGMAQ96B86 450 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 ZNF597Q96LX8 424 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 C9orf16Q9BUW7 83 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 LMAN1LQ9HAT1 526 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 TPT1P8Q9HAU6 139 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 ZNF282Q9UDV7 671 aaPredicted RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 PNMA8BQ9ULN7 279 aaPredicted RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 CA14Q9ULX7 337 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 PCDHGB4Q9UN71 923 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 CORO2BQ9UQ03 480 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 WBP11Q9Y2W2 641 aaKnown RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 AK5Q9Y6K8 562 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 UNC80Q8N2C7 3258 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 CAPN5O15484 640 aaPredicted RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 NDUFS4O43181 175 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 LCMT2O60294 686 aaKnown RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 UBTFL6P0CB48 400 aaPredicted RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 CMPK1P30085 196 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 BSGP35613 385 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 ERICH5Q6P6B1 374 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 AMIGO1Q86WK6 493 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 PLD3Q8IV08 490 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 TBC1D19Q8N5T2 526 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 PACRGLQ8N7B6 248 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 OR2L3Q8NG85 312 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 OR13H1Q8NG92 308 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 HLA-CQ95604 372 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 SLC29A1Q99808 456 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 MIEF1Q9NQG6 463 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 SPTBN5Q9NRC6 3674 aaKnown RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 DCAF13Q9NV06 445 aaKnown RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 OR6C2Q9NZP2 312 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 ZNF624Q9P2J8 865 aaPredicted RBP18.13■□□□□ 0.49
USP39-202ENST00000409025 DMTF1Q9Y222 760 aa18.13■□□□□ 0.49
USP39-202ENST00000409025 GPR37L1O60883 481 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 TNFP01375 233 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 PEBP1P30086 187 aaKnown RBP18.12■□□□□ 0.49
USP39-202ENST00000409025 MAPK12P53778 367 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 PDK3Q15120 406 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 ZCCHC8Q6NZY4 707 aaKnown RBP18.12■□□□□ 0.49
USP39-202ENST00000409025 TMEM154Q6P9G4 183 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 ZNF551Q7Z340 670 aaPredicted RBP18.12■□□□□ 0.49
USP39-202ENST00000409025 NUDT13Q86X67 352 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 TSTD1Q8NFU3 115 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 OR4E2Q8NGC2 313 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 BDH2Q9BUT1 245 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 ZNF717Q9BY31 904 aaPredicted RBP18.12■□□□□ 0.49
USP39-202ENST00000409025 SLC6A20Q9NP91 592 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 AASDHPPTQ9NRN7 309 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 SPHK1Q9NYA1 384 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 SCOCQ9UIL1 159 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 DUSP12Q9UNI6 340 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 GMEB1Q9Y692 573 aa18.12■□□□□ 0.49
USP39-202ENST00000409025 C1orf226A1L170 272 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 ISM1B1AKI9 464 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 RTCAO00442 366 aaKnown RBP18.11■□□□□ 0.49
USP39-202ENST00000409025 SERPIND1P05546 499 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 F3P13726 295 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 ILF3Q12906 894 aaKnown RBP eCLIP18.11■□□□□ 0.495e-9■■■■■ 33.1
USP39-202ENST00000409025 TMTC4Q5T4D3 741 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 CPZQ66K79 652 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 ENPP6Q6UWR7 440 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 GPR155Q7Z3F1 870 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 FAM20CQ8IXL6 584 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 MARVELD2Q8N4S9 558 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 GOT1L1Q8NHS2 421 aaPredicted RBP18.11■□□□□ 0.49
USP39-202ENST00000409025 NETO1Q8TDF5 533 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 ZFP90Q8TF47 636 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 JPH3Q8WXH2 748 aaPredicted RBP18.11■□□□□ 0.49
USP39-202ENST00000409025 SLC47A1Q96FL8 570 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 DPH7Q9BTV6 452 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 SPATA9Q9BWV2 254 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 GPR174Q9BXC1 333 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 C8orf4Q9NR00 106 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 WSB2Q9NYS7 404 aaPredicted RBP18.11■□□□□ 0.49
USP39-202ENST00000409025 ADAM29Q9UKF5 820 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 DGKBQ9Y6T7 804 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 HEATR5BQ9P2D3 2071 aa18.11■□□□□ 0.49
USP39-202ENST00000409025 SOCS2O14508 198 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms