RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 URODP06132 367 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 NPPBP16860 134 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ATN1P54259 1190 aaPredicted RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 NAE1Q13564 534 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 CYP27C1Q4G0S4 372 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ZDHHC20Q5W0Z9 365 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ZNF770Q6IQ21 691 aaPredicted RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 CNKSR3Q6P9H4 555 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 AHSA2Q719I0 299 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 CCDC80Q76M96 950 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 SLC5A8Q8N695 610 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 CYB5D2Q8WUJ1 264 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ZNF480Q8WV37 535 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 SKA2Q8WVK7 121 aaPredicted RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 BTN2A2Q8WVV5 523 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 RORBQ92753 470 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 GGHQ92820 318 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 TMEM169Q96HH4 297 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 TPD52L3Q96J77 140 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 CCDC138Q96M89 665 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 FEVQ99581 238 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ZNF717Q9BY31 904 aaPredicted RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 SGK2Q9HBY8 427 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 PDE4DIPQ5VU43 2346 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 PABPN1LA6NDY0 278 aaKnown RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 TMEM247A6NEH6 219 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 NEDD8-MDP1E9PL57 170 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 C1orf105O95561 183 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 FURINP09958 794 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 HIST1H2AGP0C0S8 130 aaPredicted RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 PABPC1P11940 636 aaKnown RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 HSD3B1P14060 373 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 HIST1H2ADP20671 130 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 HSD3B2P26439 372 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 TIA1P31483 386 aaKnown RBP eCLIP9.45□□□□□ -0.9
MSH2-202ENST00000406134 MMP12P39900 470 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 OR1E2P47887 323 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 DDX39BQ13838 428 aaKnown RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 GRIN2CQ14957 1233 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 TRIM60Q495X7 471 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 GPR153Q6NV75 609 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 C19orf48Q6RUI8 117 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ZNF547Q8IVP9 402 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 FAM9CQ8IZT9 166 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 OR4K1Q8NGD4 311 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 RHOXF1Q8NHV9 184 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 GLMNQ92990 594 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 LGALS12Q96DT0 336 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 METTL2AQ96IZ6 378 aaKnown RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 HIST1H2AHQ96KK5 128 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 HIST1H2AJQ99878 128 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 H2AFJQ9BTM1 129 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 FAM83DQ9H4H8 585 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 MAFFQ9ULX9 164 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 TRAV19A0A0A6YYK7 116 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 PRAMEF33A0A0G2JMD5 474 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 EVPLLA8MZ36 301 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 FFAR1O14842 300 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 PRAMEF10O60809 474 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 B4GALT2O60909 372 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 ZNF30P17039 623 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 EIF2DP41214 584 aaKnown RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 GJA8P48165 433 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 SFSWAPQ12872 951 aaKnown RBP9.45□□□□□ -0.9
MSH2-202ENST00000406134 CBX3Q13185 183 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 IER5LQ5T953 404 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 CCDC81Q6ZN84 652 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 LAS2Q8IYD9 372 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 C17orf50Q8WW18 174 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 MED8Q96G25 268 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 LRRC3BQ96PB8 259 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 WFDC6Q9BQY6 131 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 TAS2R16Q9NYV7 291 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 FAM8A1Q9UBU6 413 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 OGDHLQ9ULD0 1010 aa9.45□□□□□ -0.9
MSH2-202ENST00000406134 METTL15A6NJ78 407 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 NADKO95544 446 aaPredicted RBP9.44□□□□□ -0.9
MSH2-202ENST00000406134 NAT1P18440 290 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 PPIGQ13427 754 aaKnown RBP eCLIP9.44□□□□□ -0.91e-6■■□□□ 12.5
MSH2-202ENST00000406134 DNASE1L3Q13609 305 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 ARSIQ5FYB1 569 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 SLC39A5Q6ZMH5 540 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 DPPA4Q7L190 304 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 HORMAD1Q86X24 394 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 GPR156Q8NFN8 814 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 OR9Q2Q8NGE9 314 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 ASZ1Q8WWH4 475 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 RAD9AQ99638 391 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 SGPP1Q9BX95 441 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 TRIM39Q9HCM9 518 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 POLE4Q9NR33 117 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 THSD1Q9NS62 852 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 SPG21Q9NZD8 308 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 TPRKBQ9Y3C4 175 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 TESMINQ9Y4I5 508 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 DSPPQ9NZW4 1301 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 PRRC2BQ5JSZ5 2229 aaKnown RBP9.44□□□□□ -0.9
MSH2-202ENST00000406134 FAM20BO75063 409 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 CDK1P06493 297 aa9.44□□□□□ -0.9
MSH2-202ENST00000406134 ANXA4P09525 319 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms