RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NRTNQ99748 197 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 EXO1Q9UQ84 846 aaKnown RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 PCDHB11Q9Y5F2 797 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 ISPDA4D126 451 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 KRT75O95678 551 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 CYBAP13498 195 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 UGT2B10P36537 528 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 SLC15A1P46059 708 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 PREPP48147 710 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 CSNK1DP48730 415 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 HBA1P69905 142 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 GPR162Q16538 588 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 UBTD2Q8WUN7 234 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 ASIC4Q96FT7 647 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 CEP19Q96LK0 163 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 MCCC1Q96RQ3 725 aaPredicted RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 GABARAPL3Q9BY60 117 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 SLC29A3Q9BZD2 475 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 DNAJC27Q9NZQ0 273 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 TMEM98Q9Y2Y6 226 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 PCDHGB3Q9Y5G1 929 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 MYOFQ9NZM1 2061 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 PTTG1O95997 202 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 C1SP09871 688 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 CLEC2LP0C7M8 214 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 PRPS1L1P21108 318 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 S100A1P23297 94 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 MRPS15P82914 257 aaKnown RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 LSM11P83369 360 aaKnown RBP eCLIP20.16■□□□□ 0.82
CTCF-202ENST00000401394 TXNDC8Q6A555 127 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 GPR155Q7Z3F1 870 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ATCAYQ86WG3 371 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ARL14EPQ8N8R7 260 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 MYDGFQ969H8 173 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 HHIPQ96QV1 700 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 DOHHQ9BU89 302 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 RSPO3Q9BXY4 272 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 OR51B4Q9Y5P0 310 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 GNG14A0A1W2PPG7 69 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 TMEM88BA6NKF7 163 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 ZNF821O75541 412 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 GASTP01350 101 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 CNR2P34972 360 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 SPAM1P38567 509 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 PTSQ03393 145 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 DBPQ10586 325 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 DOC2AQ14183 400 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 TMC5Q6UXY8 1006 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 LINC00299Q6ZSB3 139 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 OLIG3Q7RTU3 272 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 TRIM48Q8IWZ4 208 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 OR4A15Q8NGL6 344 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ALG14Q96F25 216 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 PKP4Q99569 1192 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 WFDC6Q9BQY6 131 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 PAQR5Q9NXK6 330 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 VPS29Q9UBQ0 182 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 TRBV5-4A0A0C4DH59 114 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 SYN3O14994 580 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ANXA4P09525 319 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 HIST1H2AGP0C0S8 130 aaPredicted RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 HIST1H2ADP20671 130 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ACSM2AQ08AH3 577 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 TCTN1Q2MV58 587 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ACSM2BQ68CK6 577 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 LYPD8Q6UX82 237 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 C11orf74Q86VG3 221 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 HIST1H2AHQ96KK5 128 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 FAM129BQ96TA1 746 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 HIST1H2AJQ99878 128 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 H2AFJQ9BTM1 129 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 NXF2Q9GZY0 626 aaKnown RBP20.16■□□□□ 0.82
CTCF-202ENST00000401394 CHST8Q9H2A9 424 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 ZNF221Q9UK13 617 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 GPSM3Q9Y4H4 160 aa20.16■□□□□ 0.82
CTCF-202ENST00000401394 NRG2O14511 850 aaPredicted RBP20.15■□□□□ 0.82
CTCF-202ENST00000401394 SRCP12931 536 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 HOXC5Q00444 222 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 NAE1Q13564 534 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 ASB11Q8WXH4 323 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 CEP295NLQ96MC4 621 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 OR4K3Q96R72 315 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 HTATIP2Q9BUP3 242 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 YARS2Q9Y2Z4 477 aaKnown RBP20.15■□□□□ 0.82
CTCF-202ENST00000401394 C1orf226A1L170 272 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 E9PQ18 207 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 C6orf47O95873 294 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 CD70P32970 193 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 LIMK1P53667 647 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 RPS26P11Q5JNZ5 115 aaPredicted RBP20.15■□□□□ 0.82
CTCF-202ENST00000401394 CPTPQ5TA50 214 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 TMIGD1Q6UXZ0 262 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 CCDC190Q86UF4 302 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 VOPP1Q96AW1 172 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 ST6GAL2Q96JF0 529 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 ZFYVE19Q96K21 471 aa20.15■□□□□ 0.82
CTCF-202ENST00000401394 SORBS1Q9BX66 1292 aaKnown RBP20.15■□□□□ 0.82
CTCF-202ENST00000401394 SMG9Q9H0W8 520 aaKnown RBP20.15■□□□□ 0.82
CTCF-202ENST00000401394 KCTD5Q9NXV2 234 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms